Hg_chrom1_TN10mRNA_959
Organism: Heterodera glycines Gene Locus: chr1:12321206-12322240 Feature type: polypeptideProtein Sequence
Length: 137
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.849 | 1.188 | 1.062 | 1.762 | 0.608 | 0.936 | 0.956 | 0.365 | 1.946 | 1.184 | 0.885 | 0.429 | 1.622 | 0.983 | 1.192 | 0.834 | 0.718 | 0.774 | 1.684 | 0.644 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_918
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
— |
24-52
|
0.836
|
— | — |
1-25
|
0.984
|
0.999
|
0.000
|
0.000
|
0.140
|
0.368
|
0.156
|
0.274
|
0.209
|
0.078
|
0.112
|
0.014
|
0.211
|
0.917
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005805
|
1.000
|
1.000
|
Hsc_gene_4362.t1
|
— | — |
Q03575.1 Transthyretin-like protein 5 [Caenorhabditis elegans]
|
KAF8360466.1 ttr-18 [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
— |
IPR001534+8-128_73-128+|IPR038479+65-130+
|
— |
PF01060+73-128+Transthyretin-like_family
|
— |
PTHR21700+8-128+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-137
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.859
|
15245.650
|
8.148
|
3.500
|
21.898
|
10.949
|
40.876
|
59.124
|
12.409
|
9.489
|
51.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
140.505
|
66.664
|
190.373
|
97.719
|
99.149
|
135.960
|
36.101
|
132.888
|
9.251
|
323.200
|
188.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.282
|
0.415
|
-0.852
|
— |
0.469
|
-1.903
|
— |
-1.739
|
— | — | — | — | — |