Hg_chrom1_TN10mRNA_962
Organism: Heterodera glycines Gene Locus: chr1:12328491-12331154 Feature type: polypeptideProtein Sequence
Length: 517
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.529 | 1.02 | 0.8 | 1.225 | 1.141 | 0.944 | 1.354 | 0.688 | 1.124 | 0.381 | 1.479 | 1.182 | 1.042 | 1.303 | 1.326 | 1.11 | 0.528 | 1.19 | 0.569 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_921
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRPRRSRKRTR,KRNFSCKICFEPFSKDRRY,RRPWGCPPLVRNVDRRRPR
|
— | — |
44-64
|
0.994
|
— | — |
0.000
|
— | — |
0.963
|
0.090
|
0.004
|
0.310
|
0.049
|
0.023
|
0.032
|
0.129
|
0.040
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005808
|
1.000
|
1.000
|
Hsc_gene_4359.t1
|
Hsc_gene_4359.t1
|
— | — |
KAF7638945.1 RING-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.953|GO:0005575_0.891|GO:0110165_0.879|GO:0005622_0.802|GO:0009987_0.794|GO:0003674_0.768|GO:0065007_0.762|GO:0050789_0.755|GO:0050794_0.738|GO:0008152_0.705|GO:0044238_0.686|GO:0043170_0.677|GO:0005737_0.645|GO:0048519_0.645|GO:0043226_0.599|GO:0043229_0.574|GO:0048518_0.562|GO:0019538_0.540|GO:0048523_0.534|GO:0003824_0.533|GO:0050896_0.517|GO:0036211_0.511|GO:0043412_0.511
|
IPR001841+16-59_16-60_16-61+|IPR013083+5-89+|IPR017907+35-44+|IPR052667+14-119+
|
SM00184+16-59+
|
PF14634+16-61+zinc-RING_finger_domain
|
— |
PTHR47156+14-119+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
227-471;515-517
|
2.000
|
1-226;472-514
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
57141.150
|
4.933
|
-14.000
|
24.565
|
10.445
|
51.644
|
48.356
|
11.605
|
12.959
|
54.932
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1404.879
|
2459.338
|
1954.407
|
1552.309
|
1676.459
|
1516.637
|
2213.684
|
1504.265
|
694.518
|
796.543
|
752.818
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.561
|
-0.801
|
-0.224
|
— |
-0.130
|
0.556
|
— |
0.700
|
— | — | — | — | — |
No JSON data available for plots.