Hg_chrom1_TN10mRNA_966
Organism: Heterodera glycines Gene Locus: chr1:12342457-12345569 Feature type: polypeptideProtein Sequence
Length: 492
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.182 | 0.998 | 0.701 | 1.118 | 0.938 | 1.065 | 1.321 | 1.084 | 1.291 | 1.047 | 1.435 | 1.75 | 0.782 | 0.705 | 0.958 | 0.5 | 0.77 | 1.251 | 1.435 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_924
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.123
|
0.118
|
0.032
|
0.243
|
0.558
|
0.587
|
0.273
|
0.004
|
0.130
|
0.625
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002999
|
2.000
|
1.000
|
Hsc_gene_4356.t1
|
Hsc_gene_4356.t1
|
— |
P52717.1 Serine carboxypeptidase ctsa-1.1 [Caenorhabditis elegans]
|
KAF7635190.1 Carboxypeptidase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004185|GO:0006508
|
GO:0005575_0.841|GO:0110165_0.840|GO:0016020_0.685|GO:0005622_0.650|GO:0005737_0.629|GO:0043226_0.626|GO:0043227_0.599|GO:0043229_0.579|GO:0008150_0.574|GO:0043231_0.563|GO:0003674_0.512
|
IPR001563+61-476_68-488_142-154_155-165_188-213_459-472+|IPR018202+202-209+|IPR029058+58-491_65-490+
|
— |
PF00450+68-488+Serine_carboxypeptidase
|
G3DSA:3.40.50.1820:FF:000335+58-490+Carboxypeptidase
|
PTHR11802+61-476+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-492
|
4az3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
55545.140
|
6.194
|
-2.500
|
25.203
|
15.447
|
43.699
|
56.301
|
13.008
|
12.195
|
46.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
5395.888
|
162.767
|
107.951
|
148.163
|
11845.517
|
28582.706
|
3465.073
|
1693.760
|
98.081
|
6281.222
|
3631.304
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.819
|
— | — |
6.289
|
1.287
|
-3.035
|
-4.199
|
1.181
|
-6.131
|
— | — | — | — |
No JSON data available for plots.