SCN Proteipedia

Hg_chrom1_TN10mRNA_972

Organism: Heterodera glycines Gene Locus: chr1:12358990-12368946 Feature type: polypeptide

Protein Sequence

Length: 1,642

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.715	1.374	0.864	0.399	1.35	0.953	0.66	1.218	1.245	1.251	1.015	1.648	1.117	0.761	1.429	1.192	0.849	0.886	0.796	0.734	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_929	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	RRKRR,RKEMEQMEREHRRRNN,KDPPTGKSGKFRNKRRNANGK	—	—	—	—	—	—	0.000	—	—	0.214	0.172	0.018	0.626	0.167	0.302	0.280	0.038	0.460	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002997	2.000	1.000	Hsc_gene_4351.t1	Hsc_gene_4351.t1	—	P23678.4 Kinesin-like protein unc-104 [Caenorhabditis elegans]	KAI1728257.1 kinesin motor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003777\|GO:0005515\|GO:0005524\|GO:0007018\|GO:0008017	GO:0008150_0.953\|GO:0005575_0.911\|GO:0110165_0.910\|GO:0009987_0.909\|GO:0005622_0.865\|GO:0003674_0.813\|GO:0016020_0.803\|GO:0051179_0.723\|GO:0051234_0.711\|GO:0005737_0.707\|GO:0006810_0.676\|GO:0043226_0.652\|GO:0005488_0.646\|GO:0043229_0.634\|GO:0051641_0.631\|GO:0051649_0.600\|GO:0071944_0.588\|GO:0046907_0.578\|GO:0005886_0.571\|GO:0007017_0.535\|GO:0005515_0.525\|GO:0043227_0.518\|GO:0007018_0.517\|GO:0010970_0.514\|GO:0030705_0.514\|GO:0099111_0.514\|GO:0065007_0.513	IPR001752+1-354_3-346_9-346_83-104_203-220_238-256_296-317+\|IPR001849+1530-1626_1531-1628_1532-1623+\|IPR008984+460-546+\|IPR011993+1530-1635+\|IPR019821+237-248+\|IPR022140+837-873+\|IPR022164+1139-1189_1203-1263+\|IPR027417+2-356+\|IPR032405+350-381_391-484+\|IPR036961+1-370+\|IPR049780+1526-1626+	SM00129+1-354+\|SM00233+1531-1628+	PF00169+1532-1623+PH_domain\|PF00225+9-346+Kinesin_motor_domain\|PF12423+837-873+Kinesin_protein_1B\|PF12473+1139-1189_1203-1263+Kinesin_protein\|PF16183+350-381_391-484+Kinesin-associated	G3DSA:3.40.850.10:FF:000047+2-370+Kinesin_family_protein	PTHR47117+1-751+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	805-851;1402-1476	3.000	1-804;852-1401;1477-1642	8uts_K	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.789	186496.220	8.652	34.000	28.989	9.988	52.132	47.868	16.139	12.850	46.833

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkorange	1324.376	2396.678	3292.126	1445.322	604.310	467.656	788.835	2255.240	739.344	1020.825	900.190

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.229	-0.867	-1.079	-1.290	-0.356	0.766	2.173	-1.375	—	—	—	—	—

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