Hg_chrom1_TN10mRNA_976
Organism: Heterodera glycines Gene Locus: chr1:12394775-12400783 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.047 | 1.558 | 1.008 | 0.717 | 1.001 | 2.191 | 0.797 | 0.924 | 0.77 | 1.373 | 0.7 | 1.223 | 1.026 | 0.844 | 1.225 | 0.792 | 0.644 | 0.77 | 1.066 | 0.951 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_933
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.786
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.430
|
0.118
|
0.024
|
0.464
|
0.127
|
0.101
|
0.064
|
0.037
|
0.256
|
0.115
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q6ZW76.1 Ankyrin repeat and SAM domain-containing protein 3 [Homo sapiens]
|
KAI1713987.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001660+237-283+|IPR002110+79-108_79-111_80-95_94-176_112-141_112-144_145-174_145-177_161-175_178-207_178-210_179-210+|IPR013761+237-281_238-290+|IPR036770+44-144_72-218_145-237+
|
SM00248+79-108_112-141_145-174_178-207+
|
PF00023+179-210+Ankyrin_repeat|PF00536+237-283+SAM_domain_(Sterile_alpha_motif)|PF12796+94-176+Ankyrin_repeats_(3_copies)
|
— |
PTHR24171+132-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
299-371
|
2.000
|
1-298;372-433
|
4hqd_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
48711.810
|
6.496
|
0.000
|
24.018
|
10.162
|
48.730
|
51.270
|
12.471
|
11.547
|
48.961
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
lightyellow
|
1051.042
|
418.389
|
777.320
|
485.971
|
658.945
|
800.628
|
195.404
|
559.030
|
37.535
|
3109.276
|
1792.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
— |
-0.568
|
0.407
|
0.296
|
-2.027
|
-0.626
|
-1.375
|
-5.034
|
— | — | — | — |
No JSON data available for plots.