Hg_chrom1_TN10mRNA_981
Organism: Heterodera glycines Gene Locus: chr1:12412329-12425098 Feature type: polypeptideProtein Sequence
Length: 2,553
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.048 | 0.869 | 0.311 | 1.025 | 1.446 | 0.849 | 1.547 | 1.184 | 1.339 | 0.635 | 0.783 | 1.523 | 1.107 | 1.423 | 1.164 | 0.854 | 0.92 | 0.874 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_938
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RWEKRRR
|
— | — | — | — | — | — |
0.060
|
— | — |
0.241
|
0.070
|
0.014
|
0.313
|
0.142
|
0.217
|
0.222
|
0.068
|
0.736
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003002
|
1.000
|
2.000
|
Hsc_gene_4336.t1;Hsc_gene_4336.t2
|
— | — | — |
KAI1706317.1 cadherin-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.897|GO:0009987_0.777|GO:0005575_0.762|GO:0110165_0.757|GO:0003674_0.625|GO:0071944_0.615|GO:0065007_0.585|GO:0050789_0.569|GO:0050794_0.554|GO:0016020_0.541|GO:0005622_0.516
|
IPR039005+1556-1650+|IPR051561+1414-1660+
|
— |
PF16184+1415-1517_1557-1654_1991-2072+Cadherin-like
|
— |
PTHR45739+1414-1660+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
2264-2553
|
1.000
|
1-2263
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
284638.660
|
8.104
|
45.500
|
25.186
|
10.967
|
48.688
|
51.312
|
14.258
|
10.928
|
49.510
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1224.495
|
6387.912
|
2386.596
|
784.865
|
325.802
|
297.506
|
419.971
|
891.084
|
806.882
|
441.854
|
598.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.650
|
-3.162
|
-1.496
|
-1.301
|
— |
0.507
|
1.478
|
-0.943
|
— | — | — | — | — |
No JSON data available for plots.