Hg_chrom1_TN10mRNA_982
Organism: Heterodera glycines Gene Locus: chr1:12426348-12427133 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.133 | 1.057 | 1.299 | 0.672 | 1.082 | 1.832 | 0.541 | 1.299 | 0.722 | 1.053 | 1.377 | 1.528 | 0.902 | 0.749 | 1.723 | 0.464 | 0.958 | 0.394 | 1.998 | 0.955 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_939
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KKRK,KRKH,KRFQQLQFAKEVLSDEKKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.534
|
0.229
|
0.028
|
0.763
|
0.104
|
0.057
|
0.099
|
0.131
|
0.047
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005818
|
1.000
|
1.000
|
Hsc_gene_4335.t1
|
Hsc_gene_4335.t1
|
— |
Q75VW3.1 Chaperone protein DnaJ [Hydrogenobacter thermophilus TK-6]
|
KAI3422464.1 DnaJ sub C member 12 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.872|GO:0110165_0.867|GO:0005622_0.776|GO:0008150_0.746|GO:0016020_0.713|GO:0043226_0.672|GO:0005737_0.670|GO:0043229_0.664|GO:0009987_0.660|GO:0065007_0.629|GO:0043227_0.617|GO:0043231_0.607|GO:0003674_0.595|GO:0050789_0.589|GO:0005488_0.577|GO:0050794_0.572|GO:0008152_0.561|GO:0044238_0.557|GO:0043170_0.540
|
IPR001623+3-70_4-67_4-75_4-78_6-24_24-39_50-70+|IPR029827+4-113+|IPR036869+3-84_3-104+
|
SM00271+3-70+
|
PF00226+4-75+DnaJ_domain
|
— |
PTHR44500+4-113+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
2yua_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.629
|
18001.370
|
9.640
|
8.000
|
33.766
|
11.688
|
54.545
|
45.455
|
20.130
|
13.636
|
43.506
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
316.948
|
191.021
|
382.635
|
280.605
|
383.811
|
467.425
|
371.565
|
569.712
|
216.443
|
231.775
|
225.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
0.418
|
-0.339
|
0.419
|
0.299
|
-0.320
|
— |
-0.474
|
— | — | — | — | — |
No JSON data available for plots.