Hg_chrom1_TN10mRNA_985
Organism: Heterodera glycines Gene Locus: chr1:12436659-12438747 Feature type: polypeptideProtein Sequence
Length: 293
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.754 | 1.032 | 0.248 | 1.059 | 0.626 | 0.875 | 2.397 | 0.512 | 0.758 | 0.507 | 0.569 | 1.606 | 1.517 | 1.116 | 1.254 | 1.511 | 0.56 | 0.724 | 1.313 | 1.405 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_942
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.659
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
mitochondria
|
— |
14-34
|
0.981
|
— | — |
1-22
|
0.690
|
1.000
|
1.000
|
1.000
|
0.193
|
0.058
|
0.035
|
0.239
|
0.609
|
0.437
|
0.352
|
0.016
|
0.468
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005820
|
1.000
|
1.000
|
Hsc_gene_4332.t1
|
Hsc_gene_4332.t1
|
— | — |
KAH7724552.1 Protein H06I04.6 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002619+155-216+
|
— |
PF01705+155-216+CX_module
|
— |
PTHR47520+7-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-117
|
1.000
|
118-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.967
|
30686.380
|
9.670
|
15.500
|
16.041
|
12.969
|
37.884
|
62.116
|
10.922
|
5.119
|
60.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1328.288
|
1008.235
|
1416.206
|
896.421
|
1060.659
|
1384.014
|
1006.132
|
1686.986
|
486.615
|
2274.305
|
1508.152
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.261
|
-0.307
|
-0.551
|
0.211
|
0.399
|
-0.450
|
— |
-0.604
|
— | — | — | — | — |