Hg_chrom1_TN10mRNA_986
Organism: Heterodera glycines Gene Locus: chr1:12439418-12442680 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 1.042 | 0.686 | 0.407 | 1.572 | 1.814 | 0.562 | 1.179 | 1.153 | 1.753 | 0.786 | 1.249 | 0.721 | 0.544 | 1.251 | 1.011 | 0.812 | 0.929 | 0.181 | 0.763 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_943
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.673
|
0.098
|
0.024
|
0.518
|
0.190
|
0.284
|
0.201
|
0.003
|
0.043
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005821
|
1.000
|
1.000
|
Hsc_gene_4331.t1
|
Hsc_gene_4331.t1
|
— |
Q3SZA0.1 COP9 signalosome complex subunit 4 [Bos taurus]
|
KAH7729510.1 PCI domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.899|GO:0110165_0.891|GO:0005622_0.853|GO:0016020_0.807|GO:0043226_0.789|GO:0043229_0.771|GO:0043227_0.731|GO:0008150_0.711|GO:0043231_0.702|GO:0032991_0.578|GO:0005634_0.538|GO:0009987_0.518
|
IPR000717+205-374_302-370_303-386+|IPR036388+299-379+|IPR036390+303-374+|IPR040134+19-397+
|
SM00088+303-386+
|
PF01399+302-370+PCI_domain|PF22241+35-223+PSMD12/CSN4,_N-terminal
|
— |
PTHR10855+19-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
405-424
|
1.000
|
1-404
|
4d0p_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
47618.290
|
6.031
|
-3.000
|
26.887
|
7.783
|
50.472
|
49.528
|
13.679
|
13.208
|
44.104
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1759.272
|
2083.248
|
1213.288
|
1722.476
|
1956.709
|
1991.120
|
2270.582
|
1883.759
|
1447.442
|
1690.789
|
1586.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.010
|
-0.411
|
0.615
|
0.152
|
— |
0.201
|
— |
0.412
|
— | — | — | — | — |
No JSON data available for plots.