Hg_chrom1_TN10mRNA_987
Organism: Heterodera glycines Gene Locus: chr1:12443292-12448553 Feature type: polypeptideProtein Sequence
Length: 995
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.993 | 1.075 | 0.767 | 0.693 | 0.905 | 1.417 | 0.67 | 1.809 | 1.273 | 1.236 | 0.883 | 1.36 | 1.535 | 0.831 | 1.436 | 0.833 | 0.906 | 0.929 | 1.005 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_944
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.971
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRRK
|
43-70
|
0.960
|
— | — | — | — |
0.000
|
— | — |
0.107
|
0.079
|
0.035
|
0.306
|
0.672
|
0.263
|
0.350
|
0.073
|
0.377
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003003
|
1.000
|
2.000
|
Hsc_gene_21892.t1;Hsc_gene_4330.t1
|
Hsc_gene_4329.t1;Hsc_gene_4330.t1
|
— |
A0A291PQF1.1 UDP-glycosyltransferase UGT5 [Dactylopius coccus]
|
KAF7634721.1 UDP-glucuronosyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.886|GO:0005575_0.725|GO:0003674_0.720|GO:0009987_0.713|GO:0110165_0.697|GO:0016020_0.656|GO:0005622_0.612|GO:0043226_0.596|GO:0050896_0.586|GO:0008152_0.574|GO:0043229_0.568|GO:0071944_0.548|GO:0005886_0.541|GO:0003824_0.538|GO:0043227_0.529|GO:0016740_0.525|GO:0042221_0.507
|
IPR002213+532-938_768-992+|IPR035595+842-885+|IPR050271+522-990+
|
— |
PF00201+768-992+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+522-990+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-266
|
2.000
|
1-70;267-995
|
8inv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
112612.540
|
9.839
|
50.000
|
26.131
|
12.161
|
47.638
|
52.362
|
16.482
|
9.648
|
46.834
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
2462.867
|
772.815
|
1774.891
|
1266.887
|
874.230
|
1482.889
|
1473.369
|
1227.800
|
8433.745
|
1122.403
|
4255.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
0.576
|
-0.379
|
-0.568
|
0.778
|
— |
-0.379
|
0.406
|
2.798
|
-2.568
|
— | — | — |
No JSON data available for plots.