Hg_chrom1_TN10mRNA_989
Organism: Heterodera glycines Gene Locus: chr1:12460279-12462066 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.975 | 0.487 | 0.871 | 0.516 | 0.798 | 0.998 | 0.891 | 1.497 | 1.065 | 0.89 | 0.59 | 1.057 | 1.248 | 1.842 | 1.222 | 1.326 | 1.571 | 0.771 | 0.461 | 0.704 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_946
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.006
|
— | — |
0.120
|
0.027
|
0.003
|
0.236
|
0.266
|
0.553
|
0.317
|
0.069
|
0.862
|
0.191
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005823
|
1.000
|
1.000
|
Hsc_gene_4327.t1
|
— | — |
P50605.1 Probable syndecan [Caenorhabditis elegans]
|
KAI1724205.1 syndecan domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.946|GO:0005575_0.932|GO:0110165_0.931|GO:0032501_0.810|GO:0032502_0.776|GO:0048856_0.776|GO:0007275_0.756|GO:0009653_0.704|GO:0016020_0.605|GO:0071944_0.567|GO:0009987_0.545|GO:0005886_0.531|GO:0065007_0.523|GO:0050789_0.509
|
IPR001050+97-334+|IPR027789+273-328+
|
— |
PF01034+273-328+Syndecan_domain
|
— |
PTHR10915+97-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-261
|
1.000
|
262-334
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
36183.800
|
7.779
|
6.000
|
22.455
|
10.479
|
47.305
|
52.695
|
12.874
|
9.581
|
57.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
478.733
|
811.201
|
712.690
|
622.100
|
552.873
|
673.539
|
565.854
|
972.494
|
184.314
|
114.692
|
144.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.415
|
-0.520
|
— |
-0.202
|
0.300
|
-0.243
|
0.427
|
-0.641
|
— | — | — | — | — |
No JSON data available for plots.