Hg_chrom1_TN10mRNA_990
Organism: Heterodera glycines Gene Locus: chr1:12462945-12466108 Feature type: polypeptideProtein Sequence
Length: 606
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 0.768 | 0.87 | 0.455 | 1.045 | 1.1 | 0.432 | 1.815 | 0.953 | 1.316 | 0.725 | 1.165 | 1.558 | 0.889 | 1.65 | 1.485 | 0.757 | 0.925 | 1.015 | 0.582 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_947
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRSLVKMISRKKPTR
|
5-29
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.158
|
0.892
|
0.055
|
0.223
|
0.026
|
0.062
|
0.074
|
0.010
|
0.138
|
0.114
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005824
|
1.000
|
1.000
|
Hsc_gene_4326.t1
|
Hsc_gene_4326.t1;Hsc_gene_4326.t2
|
— | — |
KAG6960141.1 hypothetical protein JG688_00009737 [Phytophthora aleatoria]
|
KAG8059715
|
0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.789|GO:0005575_0.763|GO:0110165_0.762|GO:0009987_0.738|GO:0003674_0.706|GO:0005622_0.704|GO:0016020_0.696|GO:0043226_0.666|GO:0043229_0.654|GO:0005488_0.637|GO:0008152_0.636|GO:0044238_0.629|GO:0043227_0.613|GO:0043170_0.610|GO:0043231_0.607|GO:0005737_0.588|GO:0006139_0.580|GO:0090304_0.565|GO:0097159_0.559|GO:0016070_0.555|GO:0003676_0.537|GO:0065007_0.526|GO:0005634_0.514|GO:0003677_0.509|GO:0050789_0.507
|
IPR027417+19-307_51-479+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
559-606
|
1.000
|
1-558
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
68672.180
|
9.374
|
22.000
|
27.558
|
12.541
|
50.165
|
49.835
|
16.502
|
11.056
|
48.020
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1152.177
|
1048.370
|
1031.546
|
1451.968
|
1713.098
|
1206.233
|
2567.271
|
820.316
|
780.048
|
766.187
|
772.127
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.254
|
0.333
|
0.603
|
0.206
|
-0.491
|
1.101
|
-0.660
|
1.788
|
— | — | — | — | — |
No JSON data available for plots.