Hg_chrom1_TN10mRNA_991
Organism: Heterodera glycines Gene Locus: chr1:12466399-12469525 Feature type: polypeptideProtein Sequence
Length: 630
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 0.886 | 0.895 | 0.438 | 1.111 | 0.895 | 0.888 | 1.032 | 1.023 | 1.308 | 0.625 | 1.774 | 1.896 | 1.129 | 1.587 | 0.748 | 0.885 | 0.818 | 1.221 | 0.887 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_948
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
KGKKKRGKRSER
|
— | — | — | — | — |
0.702
|
0.204
|
0.000
|
— |
0.043
|
0.070
|
0.005
|
0.128
|
0.255
|
0.355
|
0.326
|
0.061
|
0.833
|
0.290
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005825
|
1.000
|
1.000
|
Hsc_gene_4325.t1
|
Hsc_gene_4325.t1
|
— |
Q04457.1 Gut esterase 1 [Caenorhabditis elegans]
|
KAI1727276.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.848|GO:0005575_0.762|GO:0110165_0.757|GO:0003674_0.756|GO:0009987_0.712|GO:0016020_0.685|GO:0043226_0.574|GO:0003824_0.541|GO:0065007_0.516|GO:0005622_0.512|GO:0008152_0.505
|
IPR002018+39-581+|IPR019819+119-129+|IPR029058+36-592_37-583+|IPR050309+34-586+
|
— |
PF00135+39-581+Carboxylesterase_family
|
— |
PTHR11559+34-586+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-630
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.720
|
71566.990
|
7.907
|
8.500
|
25.556
|
13.492
|
43.492
|
56.508
|
13.968
|
11.587
|
47.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
456.045
|
311.126
|
629.697
|
418.523
|
425.769
|
483.889
|
639.672
|
168.084
|
408.877
|
534.753
|
480.806
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
0.291
|
-0.481
|
— | — |
0.413
|
-1.628
|
2.069
|
— | — | — | — | — |