Hg_chrom1_TN10mRNA_993
Organism: Heterodera glycines Gene Locus: chr1:12470398-12472548 Feature type: polypeptideProtein Sequence
Length: 421
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.939 | 0.432 | 1.147 | 0.356 | 0.974 | 0.877 | 0.95 | 1.584 | 2.151 | 0.396 | 1.258 | 2.441 | 0.914 | 0.533 | 1.188 | 0.818 | 1.188 | 0.914 | 0.349 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_950
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
16-36
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.020
|
0.147
|
0.018
|
0.120
|
0.533
|
0.752
|
0.480
|
0.013
|
0.449
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003004
|
2.000
|
1.000
|
Hsc_gene_4324.t1
|
Hsc_gene_4324.t1;Hsc_gene_4324.t2
|
— | — |
KAI1729688.1 transmembrane amino acid transporter protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.853|GO:0110165_0.853|GO:0016020_0.823|GO:0005622_0.646|GO:0005737_0.646|GO:0005773_0.646|GO:0043226_0.646|GO:0043227_0.646|GO:0043229_0.646|GO:0043231_0.646|GO:0008150_0.568|GO:0009987_0.515
|
IPR013057+7-372+
|
— |
PF01490+7-372+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR48017+3-395+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-421
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
45767.310
|
7.858
|
7.000
|
11.639
|
13.064
|
32.779
|
67.221
|
7.126
|
4.513
|
50.594
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
305.203
|
22.031
|
315.785
|
196.649
|
256.073
|
325.950
|
990.476
|
336.717
|
231.163
|
245.508
|
239.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.609
|
3.021
|
-0.573
|
0.349
|
0.362
|
1.611
|
— |
1.698
|
— | — | — | — | — |
No JSON data available for plots.