Hg_chrom1_TN10mRNA_994
Organism: Heterodera glycines Gene Locus: chr1:12470398-12473915 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 0.928 | 0.403 | 1.07 | 0.333 | 0.967 | 0.845 | 0.887 | 1.626 | 2.157 | 0.47 | 1.435 | 2.402 | 1.023 | 0.543 | 1.204 | 0.763 | 1.109 | 1.023 | 0.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_950
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — |
46-66
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.023
|
0.135
|
0.017
|
0.146
|
0.507
|
0.791
|
0.480
|
0.014
|
0.421
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003004
|
2.000
|
1.000
|
Hsc_gene_4324.t1
|
Hsc_gene_4324.t1;Hsc_gene_4324.t2
|
— | — |
KAI1729688.1 transmembrane amino acid transporter protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.853|GO:0110165_0.853|GO:0016020_0.821|GO:0005622_0.644|GO:0005737_0.644|GO:0005773_0.644|GO:0043226_0.644|GO:0043227_0.644|GO:0043229_0.644|GO:0043231_0.644|GO:0008150_0.569|GO:0009987_0.516
|
IPR013057+22-402+
|
— |
PF01490+22-402+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR48017+24-425+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.848
|
49118.470
|
8.384
|
11.000
|
11.752
|
12.860
|
32.594
|
67.406
|
7.539
|
4.213
|
49.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
305.203
|
22.031
|
315.785
|
196.649
|
256.073
|
325.950
|
990.476
|
336.717
|
231.163
|
245.508
|
239.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.609
|
3.021
|
-0.573
|
0.349
|
0.362
|
1.611
|
— |
1.698
|
— | — | — | — | — |
No JSON data available for plots.