Hg_chrom1_TN10mRNA_996
Organism: Heterodera glycines Gene Locus: chr1:12477864-12482608 Feature type: polypeptideProtein Sequence
Length: 708
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.723 | 0.924 | 0.39 | 0.753 | 0.579 | 0.689 | 1.13 | 0.596 | 1.05 | 0.749 | 0.831 | 1.648 | 1.548 | 1.297 | 1.634 | 1.991 | 0.471 | 0.652 | 0.291 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_952
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.126
|
0.027
|
0.338
|
0.022
|
0.087
|
0.040
|
0.024
|
0.207
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005826
|
1.000
|
1.000
|
Hsc_gene_4323.t1
|
— | — |
A0A0B4K7J2.1 E3 SUMO-protein ligase RanBP2 [Drosophila melanogaster]
|
KAI1723565.1 ranBP1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046907
|
GO:0005575_0.933|GO:0110165_0.933|GO:0005622_0.863|GO:0008150_0.824|GO:0009987_0.790|GO:0043226_0.694|GO:0016020_0.689|GO:0043229_0.674|GO:0005737_0.668|GO:0043227_0.588|GO:0043231_0.578|GO:0065007_0.540|GO:0003674_0.538|GO:0050789_0.526
|
IPR000156+556-694_557-688_568-688+|IPR011993+540-706+|IPR045255+255-703+
|
SM00160+557-688+
|
PF00638+568-688+RanBP1_domain
|
— |
PTHR23138+255-703+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;437-564;683-708
|
2.000
|
8-436;565-682
|
7r5k_04
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
76435.570
|
9.576
|
20.000
|
23.164
|
10.028
|
52.119
|
47.881
|
13.559
|
9.605
|
60.028
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1215.936
|
1049.041
|
975.177
|
1312.798
|
1547.473
|
1288.434
|
2538.273
|
888.566
|
466.777
|
1369.724
|
982.747
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.336
|
0.186
|
0.538
|
0.205
|
-0.250
|
0.989
|
-0.640
|
1.657
|
— | — | — | — | — |
No JSON data available for plots.