Hg_chrom1_TN10mRNA_997
Organism: Heterodera glycines Gene Locus: chr1:12483392-12484990 Feature type: polypeptideProtein Sequence
Length: 280
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 1.08 | 0.844 | 0.739 | 1.607 | 0.916 | 0.723 | 0.893 | 1.508 | 1.014 | 1.19 | 2.311 | 1.29 | 0.755 | 1.312 | 0.765 | 0.878 | 0.974 | 1.099 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_953
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RQTKRRM,RRQQKKEEEEEAKKVAK
|
51-71
|
0.987
|
— | — | — | — |
0.000
|
— | — |
0.350
|
0.217
|
0.080
|
0.694
|
0.053
|
0.095
|
0.089
|
0.033
|
0.179
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001060
|
2.000
|
3.000
|
Hsc_gene_4320.t1;Hsc_gene_4322.t1;Hsc_gene_8425.t1
|
Hsc_gene_4320.t1;Hsc_gene_4322.t1
|
— |
Q23261.2 Probable methylthioribulose-1-phosphate dehydratase [Caenorhabditis elegans]
|
KAF7636128.1 Aldolase_II domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.898|GO:0110165_0.896|GO:0005622_0.850|GO:0005737_0.660|GO:0008150_0.628|GO:0009987_0.572|GO:0016020_0.530
|
IPR001303+54-253_55-251+|IPR036409+52-273_55-269+
|
SM01007+54-253+
|
PF00596+55-251+Class_II_Aldolase_and_Adducin_N-terminal_domain
|
— |
PTHR10640+28-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
278-280
|
1.000
|
1-277
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
31997.850
|
7.281
|
2.500
|
30.357
|
9.643
|
49.286
|
50.714
|
16.071
|
14.286
|
44.643
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
287.795
|
5.918
|
13.184
|
11.604
|
6.781
|
304.338
|
2262.082
|
20.892
|
8.223
|
268.638
|
157.032
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
— | — | — |
5.500
|
2.908
|
-3.980
|
6.906
|
— | — | — | — | — |
No JSON data available for plots.