SCN Proteipedia

Hg_chrom1_TN10mRNA_998

Organism: Heterodera glycines Gene Locus: chr1:12485828-12488095 Feature type: polypeptide

Protein Sequence

Length: 444

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.969	0.629	0.942	1.631	0.826	1.097	0.751	1.464	1.151	1.309	0.614	0.927	1.939	1.04	1.287	1.287	0.812	0.887	0.52	0.265	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_954	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	39-64	0.959	—	—	0.000	—	—	0.828	0.106	0.021	0.388	0.028	0.036	0.031	0.005	0.061	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005827	1.000	1.000	Hsc_gene_4321.t1	Hsc_gene_4321.t1	—	Q6PH18.1 Nuclear receptor subfamily 2 group F member 1-B [Danio rerio]	KAI1700520.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0006355\|GO:0008270\|GO:0043565	GO:0008150_0.928\|GO:0009987_0.807\|GO:0005575_0.796\|GO:0110165_0.796\|GO:0005622_0.712\|GO:0003674_0.703\|GO:0065007_0.690\|GO:0050789_0.675\|GO:0050794_0.661\|GO:0016020_0.657\|GO:0043226_0.645\|GO:0043229_0.626\|GO:0005488_0.625\|GO:0008152_0.610\|GO:0044238_0.598\|GO:0044237_0.596\|GO:0009058_0.570\|GO:0043170_0.565\|GO:0043227_0.561\|GO:0043231_0.552\|GO:0044249_0.552\|GO:0009059_0.540\|GO:0019222_0.533\|GO:0031323_0.530\|GO:0050896_0.529\|GO:0010467_0.527\|GO:0060255_0.522\|GO:0080090_0.520\|GO:0097159_0.519\|GO:0006139_0.517\|GO:0034654_0.508\|GO:0009889_0.507\|GO:0031326_0.507\|GO:0010556_0.506\|GO:0090304_0.504\|GO:0010468_0.503	IPR000536+131-429_197-413_209-400+\|IPR001628+28-100_28-104_30-98_31-47_47-62_81-89_89-97+\|IPR013088+21-121+\|IPR035500+197-430+	SM00399+28-100+\|SM00430+209-400+	PF00104+197-413+Ligand-binding_domain_of_nuclear_hormone_receptor\|PF00105+30-98+Zinc_finger,_C4_type_(two_domains)	—	PTHR46011+29-413+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-14;441-444	1.000	15-440	1hcq_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.747	48942.200	7.467	7.500	23.423	11.486	44.369	55.631	13.288	10.135	52.477

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	950.587	1785.409	1139.186	869.799	746.407	909.317	667.528	2816.227	297.657	585.371	462.065

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.877	-1.175	-0.281	-0.253	0.299	-0.436	1.526	-1.934	—	—	—	—	—

No JSON data available for plots.

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