Hg_chrom1_TN10mRNA_999

Organism: Heterodera glycines    Gene Locus: chr1:12493840-12498319    Feature type: polypeptide

Protein Sequence

Length: 555
FASTA 



  
  

    

      
        

          COMPOSITION
          
            Ala
          
            Asn
          
            Asp
          
            Cys
          
            Glu
          
            Gln
          
            Gly
          
            His
          
            Ile
          
            Leu
          
            Lys
          
            Met
          
            Phe
          
            Pro
          
            Arg
          
            Ser
          
            Thr
          
            Val
          
            Trp
          
            Tyr
          
            Xaa
          
        

      
      
        
ABUNDANCE
          
            
            
              0.629
              
            
            
          
            
            
              0.922
              
            
            
          
            
            
              1.016
              
            
            
          
            
            
              0.808
              
            
            
          
            
            
              0.871
              
            
            
          
            
            
              0.832
              
            
            
          
            
            
              0.751
              
            
            
          
            
            
              1.712
              
            
            
          
            
            
              1.722
              
            
            
          
            
            
              1.242
              
            
            
          
            
            
              0.901
              
            
            
          
            
            
              1.696
              
            
            
          
            
            
              1.201
              
            
            
          
            
            
              1.109
              
            
            
          
            
            
              1.728
              
            
            
          
            
            
              1.004
              
            
            
          
            
            
              0.798
              
            
            
          
            
            
              0.819
              
            
            
          
            
            
              0.554
              
            
            
          
            
            
              0.636
              
            
            
          
            
            
              0.0
              
            
            
          
        

      
    

  

  







  
No JSON data available for plots.



















Features


   TSV







    

      
        

            GENOMICS
          
            Gene Name
          
            Nested Gene
          
            (host gene)
          
            Average
          
            TN7
          
            TN8
          
            TN10
          
            TN20
          
            TN22
          
            MM26
          
            OP50
          
            PA3
          
            X12
          
        

      
      
        

          
            
              
Hg_chrom1_TN10gene_955

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            EFFECTORS
          
            SCN putative
          
            SCN known (N)
          
            SCN known (P)
          
            BCN known
          
            BCN putative
          
            Effector Islands
          
            Cluster Name
          
            (score)
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
24-J3_Female

            		
          
            
              
1.000

            		
          
        

      
    

  




    

      
        

            SECRETION
          
            Secretion
          
            DL-signals
          
            DL-localization
          
            Localizer
          
            L-nucleus
          
            L-mitochondria
          
            (score)
          
            L-chloroplast
          
            (score)
          
            Signal Peptide
          
            (score_v5)
          
            (score_v6)
          
            (TM_v5)
          
            (TM_v6)
          
            nucleus
          
            mitochondrion
          
            plastid
          
            cytoplasm
          
            endoplasmic_reticulum
          
            lysosome_vacuole
          
            golgi_apparatus
          
            peroxisome
          
            peroxisome
          
            extracellular
          
        

      
      
        

          
            
              
not_secreted

            		
          
            
              
nuclear_localization_signal

            		
          
            
              
cytoplasm|nucleus

            		
          
            
              
                —
              
            
          
            
              
RPRR,RRRR

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.000

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
0.594

            		
          
            
              
0.297

            		
          
            
              
0.104

            		
          
            
              
0.616

            		
          
            
              
0.101

            		
          
            
              
0.040

            		
          
            
              
0.043

            		
          
            
              
0.013

            		
          
            
              
0.086

            		
          
            
              
0.057

            		
          
        

      
    

  




    

      
        

            HOMOLOGY
          
            Orthogroup
          
            (SCN counts)
          
            (BCN counts)
          
            (BCN genes)
          
            BCN hits
          
            C. elegans hits
          
            SP best hit
          
            NR best hit
          
            HGT Donor
          
            HGT Index
          
        

      
      
        

          
            
              
OG0005828

            		
          
            
              
1.000

            		
          
            
              
1.000

            		
          
            
              
Hsc_gene_4315.t1

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
Q20875.1 Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 [Caenorhabditis elegans]

            		
          
            
              
XP_065184926.1 putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 [Sycon ciliatum]

            		
          
            
              
No

            		
          
            
              
0.000

            		
          
        

      
    

  




    

      
        

            FUNCTIONAL
          
            TF
          
            GO terms
          
            DeepGoPlus
          
            InterPro
          
            SMART
          
            Pfam
          
            FunFam
          
            Panther
          
        

      
      
        

          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
GO:0005575_0.861|GO:0110165_0.855|GO:0005622_0.799|GO:0008150_0.776|GO:0016020_0.769|GO:0043226_0.728|GO:0043229_0.719|GO:0009987_0.696|GO:0043227_0.688|GO:0043231_0.675|GO:0003674_0.566|GO:0005634_0.534|GO:0008152_0.527|GO:0044238_0.520|GO:0009058_0.514|GO:0044237_0.510

            		
          
            
              
IPR001650+232-313+|IPR007502+362-452+|IPR027417+8-74_20-501_105-202_203-334+|IPR048333+363-391+

            		
          
            
              
SM00847+362-452+

            		
          
            
              
PF00271+232-313+Helicase_conserved_C-terminal_domain|PF04408+363-391+Helicase_associated_domain_(HA2),_winged-helix|PF21010+392-451+Helicase_associated_domain_(HA2),_ratchet-like

            		
          
            
              
                —
              
            
          
            
              
PTHR18934+30-315+

            		
          
        

      
    

  




    

      
        

            SEQUENCE
          
            Protein Sequence
          
        

      
      
        

          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            STRUCTURE
          
            Disorder
          
            (regions)
          
            Ordered
          
            (regions)
          
            PDB
          
            (hit type)
          
        

      
      
        

          
            
              
regions

            		
          
            
              
1-35

            		
          
            
              
1.000

            		
          
            
              
36-555

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
        

      
    

  




    

      
        

            BIOPHYSICS
          
            Inclusion Body
          
            Mol weight
          
            pI
          
            Net Charge
          
            Charged
          
            Aromatic
          
            Polar
          
            Non-polar
          
            Basic
          
            Acidic
          
            Small
          
        

      
      
        

          
            
              
0.845

            		
          
            
              
62971.840

            		
          
            
              
9.766

            		
          
            
              
29.500

            		
          
            
              
28.649

            		
          
            
              
10.631

            		
          
            
              
47.748

            		
          
            
              
52.252

            		
          
            
              
17.838

            		
          
            
              
10.811

            		
          
            
              
46.667

            		
          
        

      
    

  




    

      
        

            EXPRESSION
          
            Bin13
          
            Bin38
          
            Average
          
            Egg
          
            ppJ2
          
            pJ2
          
            J3
          
            J4
          
            Female
          
            Male
          
            Gland (J2)
          
            Gland (J3)
          
            Gland (J2+J3)
          
        

      
      
        

          
            
              
grey60

            		
          
            
              
white

            		
          
            
              
129.250

            		
          
            
              
24.038

            		
          
            
              
42.898

            		
          
            
              
105.362

            		
          
            
              
309.590

            		
          
            
              
160.816

            		
          
            
              
658.758

            		
          
            
              
67.847

            		
          
            
              
46.195

            		
          
            
              
17.333

            		
          
            
              
29.703

            		
          
        

      
    

  




    

      
        

            DGE
          
            Egg vs ppJ2
          
            Egg vs pJ2
          
            ppJ2 vs pJ2
          
            pJ2 vs J3
          
            J3 vs J4
          
            J4 vs F
          
            J4 vs M
          
            F vs M
          
            G(J3 vs J2)
          
            G(J2) vs pJ2
          
            G(J3) vs J3
          
            G(J2) lines
          
            G(J3) lines
          
        

      
      
        

          
            
              
0.606

            		
          
            
              
1.995

            		
          
            
              
1.403

            		
          
            
              
1.525

            		
          
            
              
-0.932

            		
          
            
              
2.044

            		
          
            
              
-1.356

            		
          
            
              
3.424

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
            
              
4.985

            		
          
            
              
                —
              
            
          
            
              
                —
              
            
          
        

      
    

  











  
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