Hg_chrom2_TN10mRNA_2297
Organism: Heterodera glycines Gene Locus: chr2:69895-71720 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.424 | 1.13 | 0.81 | 0.14 | 1.282 | 1.038 | 1.109 | 2.227 | 1.529 | 1.422 | 0.613 | 1.429 | 1.012 | 1.246 | 1.239 | 0.81 | 0.929 | 0.859 | 0.934 | 0.834 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2208
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.491
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.709
|
0.232
|
0.015
|
0.575
|
0.321
|
0.114
|
0.119
|
0.009
|
0.032
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006514
|
1.000
|
1.000
|
Hsc_gene_25974.t1
|
— | — |
Q3KRA9.2 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Homo sapiens]
|
KAH7729494.1 Oxoglutarate/iron-dependent dioxygenase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.887|GO:0110165_0.881|GO:0005622_0.819|GO:0016020_0.809|GO:0043226_0.768|GO:0043229_0.763|GO:0043227_0.745|GO:0043231_0.745|GO:0005634_0.632|GO:0008150_0.620|GO:0003674_0.546
|
IPR005123+104-240+|IPR027450+9-189+|IPR032862+5-193+|IPR037151+1-209+
|
— |
PF13532+9-189+2OG-Fe(II)_oxygenase_superfamily
|
— |
PTHR46030+5-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
27830.640
|
6.574
|
0.500
|
26.721
|
12.146
|
46.964
|
53.036
|
14.575
|
12.146
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
298.949
|
78.465
|
175.616
|
137.514
|
148.358
|
106.380
|
259.648
|
164.472
|
29.184
|
884.591
|
517.989
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
0.672
|
-0.245
|
— |
-0.465
|
1.298
|
0.521
|
0.803
|
-5.055
|
— | — | — | — |
No JSON data available for plots.