Hg_chrom2_TN10mRNA_2298
Organism: Heterodera glycines Gene Locus: chr2:72903-75778 Feature type: polypeptideProtein Sequence
Length: 668
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 1.462 | 1.089 | 0.465 | 0.948 | 1.152 | 0.624 | 1.722 | 1.663 | 1.497 | 0.907 | 1.585 | 1.248 | 0.864 | 0.947 | 0.92 | 0.785 | 1.043 | 0.345 | 0.572 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2209
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_25975
|
— | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKSLNGFSHNIFLPKIIKK
|
— | — | — | — |
1-37
|
0.878
|
0.987
|
0.000
|
0.000
|
0.439
|
0.108
|
0.018
|
0.695
|
0.231
|
0.341
|
0.196
|
0.077
|
0.168
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006515
|
1.000
|
1.000
|
Hsc_gene_25975.t1
|
Hsc_gene_25975.t1;Hsc_gene_25977.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.953|GO:0003674_0.854|GO:0008152_0.792|GO:0009987_0.765|GO:0050896_0.696|GO:0005575_0.693|GO:0110165_0.677|GO:0044237_0.639|GO:0009058_0.630|GO:0003824_0.628|GO:0044249_0.612|GO:0006790_0.550|GO:0006518_0.547|GO:0006575_0.547|GO:0006749_0.547|GO:0006750_0.547|GO:0019184_0.547|GO:0042398_0.547|GO:0043043_0.547|GO:0043603_0.547|GO:0043604_0.547|GO:0044272_0.547|GO:0016874_0.535|GO:0004363_0.530|GO:0016879_0.530|GO:0016881_0.530|GO:1904091_0.530|GO:0005622_0.520|GO:0042221_0.505
|
IPR004887+382-482+|IPR005615+183-665_186-664+|IPR014042+241-523+|IPR014049+188-606+|IPR014709+524-593+|IPR016185+381-484+|IPR037013+359-487+
|
— |
PF03199+382-482+Eukaryotic_glutathione_synthase|PF03917+186-664+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+183-665+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-668
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
75068.330
|
6.836
|
4.500
|
25.749
|
10.329
|
47.754
|
52.246
|
14.072
|
11.677
|
47.605
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
504.093
|
21.539
|
30.402
|
1318.963
|
742.627
|
188.139
|
180.909
|
39.423
|
421.546
|
943.498
|
719.804
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.797
|
5.547
|
-0.859
|
-1.968
|
— |
-2.371
|
2.341
|
— | — | — | — | — |