Hg_chrom2_TN10mRNA_2300
Organism: Heterodera glycines Gene Locus: chr2:83400-87509 Feature type: polypeptideProtein Sequence
Length: 551
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.823 | 1.393 | 1.584 | 0.125 | 0.786 | 1.489 | 0.886 | 2.359 | 0.807 | 0.883 | 0.632 | 1.174 | 1.361 | 0.733 | 1.482 | 1.167 | 1.041 | 0.55 | 1.256 | 0.907 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2211
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— |
RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.146
|
0.077
|
0.033
|
0.149
|
0.545
|
0.487
|
0.598
|
0.012
|
0.380
|
0.521
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006517
|
1.000
|
1.000
|
Hsc_gene_25979.t1
|
— | — |
G5EBU3.1 Matrix metalloproteinase-C [Caenorhabditis elegans]
|
KAF7635263.1 ZnMc domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0031012
|
GO:0008150_0.802|GO:0003674_0.740|GO:0005575_0.693|GO:0110165_0.691|GO:0009987_0.657|GO:0008152_0.515|GO:0003824_0.502
|
IPR001818+264-432+|IPR002477+216-243+|IPR006026+263-433+|IPR021190+243-256_290-305_314-342_376-401+|IPR024079+160-435+|IPR033739+264-432+|IPR036365+211-253+
|
SM00235+263-433+
|
PF00413+264-432+Matrixin|PF01471+216-243+Putative_peptidoglycan_binding_domain
|
G3DSA:3.40.390.10:FF:000091+160-436+Matrix_metalloproteinase-16-like_Protein
|
PTHR10201+129-487+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;408-551
|
1.000
|
78-407
|
1rm8_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
62526.550
|
6.635
|
2.000
|
29.583
|
14.338
|
55.898
|
44.102
|
16.152
|
13.430
|
51.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1123.655
|
1387.046
|
1131.913
|
489.629
|
1347.911
|
1304.302
|
456.383
|
5075.040
|
407.429
|
413.333
|
410.803
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.520
|
-1.639
|
-1.102
|
1.428
|
— |
-1.507
|
1.855
|
-3.334
|
— | — | — | — | — |
No JSON data available for plots.