Hg_chrom2_TN10mRNA_2310
Organism: Heterodera glycines Gene Locus: chr2:119252-122708 Feature type: polypeptideProtein Sequence
Length: 570
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.306 | 0.861 | 0.302 | 1.228 | 1.215 | 0.522 | 1.14 | 2.066 | 1.233 | 1.356 | 1.445 | 1.072 | 0.978 | 0.716 | 0.677 | 0.69 | 1.09 | 0.81 | 0.877 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2219
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
KRRP
|
— | — |
25-45
|
0.998
|
1-18
|
0.997
|
1.000
|
0.000
|
0.000
|
0.301
|
0.290
|
0.037
|
0.628
|
0.141
|
0.304
|
0.256
|
0.024
|
0.271
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006522
|
1.000
|
1.000
|
Hsc_gene_25953.t1
|
Hsc_gene_25953.t1
|
— |
P9WHK0.1 Putative phosphoribosyl transferase MT0597 [Mycobacterium tuberculosis CDC1551]
|
KAF7627188.1 Pribosyltran domain-containing protein [Meloidogyne graminicola]
|
HEX6114964
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.895|GO:0110165_0.895|GO:0005622_0.837|GO:0005737_0.800|GO:0071944_0.739|GO:0005829_0.634|GO:0030312_0.553|GO:0005618_0.548|GO:0009274_0.540|GO:0016020_0.523
|
IPR000719+1-344+|IPR000836+357-531_372-529+|IPR011009+205-349+|IPR029057+350-560_351-554+|IPR052036+340-561+
|
— |
PF00156+372-529+Phosphoribosyl_transferase_domain
|
— |
PTHR31299+340-561+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-570
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
64607.000
|
8.058
|
8.500
|
26.842
|
10.175
|
46.140
|
53.860
|
14.737
|
12.105
|
44.386
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
700.559
|
9.191
|
29.942
|
603.183
|
208.202
|
37.374
|
43.787
|
32.709
|
312.682
|
2468.787
|
1544.742
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.473
|
5.901
|
4.438
|
-1.566
|
-2.464
|
— | — |
0.563
|
— | — |
-3.402
|
— | — |