Hg_chrom2_TN10mRNA_2321
Organism: Heterodera glycines Gene Locus: chr2:168109-171991 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.16 | 1.16 | 0.69 | 0.826 | 0.798 | 0.921 | 0.76 | 1.098 | 1.863 | 1.484 | 0.665 | 1.644 | 1.663 | 0.844 | 1.181 | 0.57 | 0.753 | 0.968 | 1.689 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2230
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRKPSPLLRLQKRQMR
|
35-66
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.135
|
0.251
|
0.045
|
0.232
|
0.823
|
0.276
|
0.316
|
0.037
|
0.229
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001761
|
3.000
|
1.000
|
Hsc_gene_25967.t1
|
Hsc_gene_25967.t1
|
— |
Q7Z5P4.1 17-beta-hydroxysteroid dehydrogenase 13 [Homo sapiens]
|
KAI1712637.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.846|GO:0005575_0.706|GO:0110165_0.696|GO:0003674_0.635|GO:0008152_0.602|GO:0009987_0.600|GO:0044238_0.552|GO:0005622_0.535|GO:0003824_0.530
|
IPR002347+49-244_50-67_127-138_174-190_200-219_225-242+|IPR028110+408-494+|IPR036291+44-312+
|
— |
PF00106+49-244+short_chain_dehydrogenase|PF14934+408-494+Transmembrane_protein_254
|
— |
PTHR24322+26-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-501
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.715
|
56221.860
|
8.603
|
13.500
|
20.958
|
12.375
|
38.124
|
61.876
|
12.375
|
8.583
|
46.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
lightyellow
|
1006.588
|
83.899
|
430.063
|
169.998
|
211.919
|
449.420
|
335.231
|
614.508
|
19.989
|
3528.192
|
2024.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.131
|
0.882
|
-1.232
|
0.285
|
1.100
|
-0.414
|
— |
-0.735
|
-7.518
|
— |
-3.583
|
— | — |
No JSON data available for plots.