Hg_chrom2_TN10mRNA_2324
Organism: Heterodera glycines Gene Locus: chr2:180089-182681 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.1 | 1.131 | 0.983 | 0.373 | 0.721 | 0.762 | 0.45 | 1.351 | 1.441 | 1.424 | 1.269 | 0.954 | 2.027 | 0.78 | 1.213 | 0.849 | 0.532 | 0.778 | 1.663 | 1.351 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2232
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KKLKPSSPLVSSSFRKKVS
|
27-47
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.123
|
0.033
|
0.001
|
0.184
|
0.443
|
0.336
|
0.873
|
0.004
|
0.114
|
0.352
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003162
|
2.000
|
1.000
|
Hsc_gene_25972.t1
|
Hsc_gene_25972.t1
|
— | — |
KAF7631078.1 Hexosyltransferase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006486|GO:0016020|GO:0016758
|
GO:0008150_0.946|GO:0008152_0.734|GO:0009058_0.709|GO:0009987_0.708|GO:0003674_0.697|GO:0044238_0.652|GO:0003824_0.589|GO:0044237_0.541|GO:0016740_0.525|GO:0005575_0.513|GO:0110165_0.512|GO:0044249_0.511
|
IPR002659+98-316_118-314+
|
— |
PF01762+118-314+Galactosyltransferase
|
— |
PTHR11214+98-316+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-370
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
42951.830
|
10.016
|
22.000
|
26.757
|
16.757
|
43.784
|
56.216
|
17.027
|
9.730
|
42.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
230.929
|
3.729
|
33.294
|
35.112
|
9.000
|
864.062
|
234.972
|
156.182
|
45.709
|
474.900
|
290.961
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.927
|
3.093
|
— |
-1.996
|
6.599
|
-1.872
|
-2.552
|
— | — | — |
-5.405
|
— | — |
No JSON data available for plots.