Hg_chrom2_TN10mRNA_2334
Organism: Heterodera glycines Gene Locus: chr2:221612-224019 Feature type: polypeptideProtein Sequence
Length: 261
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 3.029 | 1.393 | 1.189 | 1.149 | 1.277 | 0.684 | 2.299 | 1.192 | 0.518 | 0.522 | 1.352 | 1.277 | 1.032 | 0.782 | 1.04 | 1.256 | 0.522 | 0.295 | 0.338 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2242
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2334
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.869
|
0.977
|
0.000
|
0.000
|
0.279
|
0.335
|
0.013
|
0.571
|
0.383
|
0.194
|
0.399
|
0.128
|
0.217
|
0.157
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003168
|
1.000
|
2.000
|
Hsc_gene_25990.t1;Hsc_gene_25990.t2
|
— | — |
Q9SLC4.1 RING-H2 finger protein ATL40 [Arabidopsis thaliana]
|
KAK1321051.1 RING-H2 finger protein ATL2 [Acorus calamus]
|
KAH7365981
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.930|GO:0003674_0.692|GO:0008152_0.585|GO:0043170_0.561|GO:0005575_0.553|GO:0110165_0.553|GO:0044238_0.526|GO:0003824_0.525|GO:0140096_0.525|GO:0009987_0.509
|
IPR001841+181-224_182-223_182-224+|IPR013083+140-229+|IPR053238+19-227+
|
SM00184+182-223+
|
PF13639+181-224+Ring_finger_domain
|
— |
PTHR14155+19-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-185;260-261
|
1.000
|
186-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
29131.540
|
4.642
|
-13.000
|
26.437
|
10.728
|
59.387
|
40.613
|
11.877
|
14.559
|
58.621
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1102.913
|
1.078
|
15.863
|
143.592
|
110.465
|
12.485
|
38.744
|
6.874
|
281.293
|
4490.862
|
2686.761
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.657
|
6.929
|
3.284
|
-0.407
|
-3.131
|
1.646
|
— |
2.637
|
— | — | — | — | — |