Hg_chrom2_TN10mRNA_2335
Organism: Heterodera glycines Gene Locus: chr2:228047-232426 Feature type: polypeptideProtein Sequence
Length: 513
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.771 | 1.043 | 0.921 | 0.336 | 1.17 | 1.1 | 0.743 | 0.975 | 1.646 | 1.343 | 1.004 | 1.72 | 1.462 | 0.75 | 1.114 | 1.086 | 0.639 | 0.827 | 1.35 | 0.917 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2243
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2335
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
mitochondria
|
— |
33-57
|
0.959
|
— | — |
1-20
|
0.847
|
1.000
|
0.000
|
0.000
|
0.497
|
0.220
|
0.103
|
0.688
|
0.176
|
0.203
|
0.195
|
0.051
|
0.112
|
0.235
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006526
|
1.000
|
1.000
|
Hsc_gene_25991.t1
|
Hsc_gene_25991.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
KAI1726783.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.945|GO:0003674_0.854|GO:0008152_0.787|GO:0009987_0.754|GO:0005575_0.705|GO:0110165_0.697|GO:0050896_0.692|GO:0044237_0.641|GO:0009058_0.634|GO:0003824_0.618|GO:0044249_0.612|GO:0006790_0.548|GO:0006518_0.543|GO:0006575_0.543|GO:0006749_0.543|GO:0006750_0.543|GO:0019184_0.543|GO:0042398_0.543|GO:0043043_0.543|GO:0043603_0.543|GO:0043604_0.543|GO:0044272_0.543|GO:0005622_0.539|GO:0016874_0.532|GO:0004363_0.527|GO:0016879_0.527|GO:0016881_0.527|GO:1904091_0.527
|
IPR004887+235-336+|IPR005615+21-513_29-513_36-512+|IPR014042+91-374+|IPR014049+38-454+|IPR014709+375-442+|IPR016185+236-338+|IPR037013+212-338+
|
— |
PF03199+235-336+Eukaryotic_glutathione_synthase|PF03917+36-512+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
G3DSA:3.30.1490.50:FF:000002+375-442+Glutathione_synthetase
|
PTHR11130+29-513+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-513
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
58398.130
|
7.477
|
5.000
|
26.121
|
12.086
|
46.394
|
53.606
|
14.035
|
12.086
|
44.250
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1129.587
|
2.456
|
7.894
|
1876.034
|
1118.834
|
88.948
|
108.247
|
13.755
|
837.564
|
3107.706
|
2134.788
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.447
|
9.444
|
8.009
|
-0.777
|
-3.640
|
— |
-2.805
|
3.117
|
— | — | — | — | — |