Hg_chrom2_TN10mRNA_2336
Organism: Heterodera glycines Gene Locus: chr2:237760-242800 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.995 | 0.871 | 0.729 | 0.277 | 0.891 | 1.988 | 0.477 | 2.139 | 1.01 | 1.192 | 0.932 | 2.202 | 0.817 | 0.72 | 1.364 | 1.184 | 1.008 | 0.972 | 0.411 | 1.022 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2244
|
— | — |
0.778
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — |
34-55
|
0.972
|
13-63
|
0.982
|
— | — |
0.000
|
— | — |
0.446
|
0.198
|
0.009
|
0.564
|
0.071
|
0.172
|
0.086
|
0.017
|
0.154
|
0.111
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003169
|
1.000
|
2.000
|
Hsc_gene_25993.t4;Hsc_gene_25993.t5
|
Hsc_gene_25993.t1;Hsc_gene_25993.t2;Hsc_gene_25993.t3;Hsc_gene_25993.t4;Hsc_gene_25993.t5
|
— | — |
KAH7678302.1 Protein F59B8.1 a, partial [Aphelenchus avenae]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR21010+18-368+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69
|
1.000
|
70-374
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
42497.540
|
10.008
|
21.000
|
26.471
|
11.230
|
52.406
|
47.594
|
17.112
|
9.358
|
45.722
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
759.497
|
404.498
|
445.291
|
130.576
|
34.823
|
33.107
|
68.135
|
153.126
|
369.776
|
2569.383
|
1626.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.768
|
-1.660
|
-1.934
|
— |
1.050
|
2.109
|
-1.029
|
-2.881
|
— |
-5.702
|
— | — |
No JSON data available for plots.