Hg_chrom2_TN10mRNA_2341
Organism: Heterodera glycines Gene Locus: chr2:257012-261330 Feature type: polypeptideProtein Sequence
Length: 538
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.67 | 2.896 | 0.811 | 0.705 | 0.805 | 1.954 | 0.73 | 2.045 | 0.991 | 0.829 | 0.225 | 1.203 | 0.774 | 0.929 | 1.479 | 1.301 | 1.158 | 0.789 | 0.286 | 0.547 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2249
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2341
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
mitochondria
|
— |
8-31
|
0.985
|
— | — |
1-20
|
0.987
|
0.927
|
0.000
|
0.000
|
0.427
|
0.155
|
0.013
|
0.569
|
0.197
|
0.131
|
0.299
|
0.022
|
0.443
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006530
|
1.000
|
1.000
|
Hsc_gene_25997.t1
|
Hsc_gene_25997.t1
|
— |
Q9SLC3.1 E3 ubiquitin-protein ligase ATL41 [Arabidopsis thaliana]
|
XP_051207549.1 RING-H2 finger protein ATL32-like [Lolium perenne]
|
KAG7574613
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0003674_0.648|GO:0005575_0.626|GO:0110165_0.619|GO:0008152_0.605|GO:0043170_0.605|GO:0009987_0.566|GO:0044238_0.556|GO:0016020_0.537|GO:0019538_0.515
|
IPR001841+403-446_404-445_404-446+|IPR013083+398-450+
|
SM00184+404-445+
|
PF13639+403-446+Ring_finger_domain
|
— |
PTHR46539+376-462+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-391
|
1.000
|
392-538
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.917
|
59904.560
|
7.179
|
8.000
|
22.119
|
9.108
|
58.364
|
41.636
|
12.825
|
9.294
|
57.063
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
349.757
|
4.736
|
17.358
|
478.865
|
155.691
|
14.945
|
21.892
|
4.413
|
770.774
|
690.392
|
724.841
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.644
|
6.521
|
4.898
|
-1.652
|
-3.367
|
— |
-1.878
|
2.456
|
— | — | — | — | — |