Hg_chrom2_TN10mRNA_2343
Organism: Heterodera glycines Gene Locus: chr2:266443-267341 Feature type: polypeptideProtein Sequence
Length: 185
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.383 | 1.131 | 0.491 | 2.05 | 0.721 | 1.109 | 0.837 | 2.162 | 1.201 | 0.95 | 0.491 | 1.59 | 1.051 | 0.832 | 0.552 | 2.008 | 0.709 | 0.983 | 0.416 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2251
|
— | — |
1.778
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
22C12|AF500029.1#tn8jg15100.t1
|
16B09|AF4902461#X12jg3398t1
|
Hsc_gene_26000;Hsc_gene_26001;Hsc_gene_26067;Hsc_gene_26068;Hsc_gene_670;Hsc_gene_21866;Hsc_gene_21867
|
— |
Hg_chrom2_TN10mRNA_2343
|
21-Not_Clustered
|
0.728
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
— | — | — | — | — |
1-25
|
0.992
|
0.999
|
0.000
|
0.000
|
0.894
|
0.310
|
0.032
|
0.261
|
0.038
|
0.090
|
0.047
|
0.070
|
0.183
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001103
|
4.000
|
1.000
|
Hsc_gene_26000.t1
|
Hsc_gene_26000.t1;Hsc_gene_26001.t1;Hsc_gene_26068.t1
|
— | — |
AAO85454.1 putative gland protein G16B09 [Heterodera glycines]
|
HJW35690
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
160-185
|
1.000
|
1-159
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
19279.890
|
6.864
|
2.000
|
17.297
|
8.649
|
44.865
|
55.135
|
10.270
|
7.027
|
61.622
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1252.162
|
0.230
|
2.087
|
501.471
|
538.746
|
66.567
|
147.206
|
36.429
|
13.821
|
4983.068
|
2853.391
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.958
|
10.956
|
8.047
|
— |
-3.002
|
1.153
|
-0.989
|
2.159
|
-8.624
|
— | — | — | — |