Hg_chrom2_TN10mRNA_2347
Organism: Heterodera glycines Gene Locus: chr2:285516-290726 Feature type: polypeptideProtein Sequence
Length: 527
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 0.883 | 1.173 | 0.393 | 1.012 | 0.924 | 0.633 | 0.854 | 1.096 | 1.154 | 1.035 | 1.786 | 1.739 | 0.985 | 0.852 | 0.786 | 1.058 | 1.294 | 0.73 | 1.228 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2255
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_26006
|
— |
Hg_chrom2_TN10mRNA_2347
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KRYDEYEIDELTKYKAK
|
— | — | — | — |
1-20
|
0.994
|
0.992
|
0.000
|
0.000
|
0.423
|
0.239
|
0.079
|
0.713
|
0.169
|
0.248
|
0.170
|
0.021
|
0.097
|
0.348
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006533
|
1.000
|
1.000
|
Hsc_gene_26006.t1
|
Hsc_gene_26006.t1
|
— |
Q5EAC2.1 Glutathione synthetase [Bos taurus]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.941|GO:0003674_0.868|GO:0008152_0.792|GO:0009987_0.747|GO:0005575_0.690|GO:0110165_0.690|GO:0050896_0.680|GO:0003824_0.659|GO:0044237_0.642|GO:0009058_0.622|GO:0044249_0.604|GO:0006790_0.552|GO:0043603_0.550|GO:0006518_0.546|GO:0006575_0.546|GO:0006749_0.546|GO:0006750_0.546|GO:0019184_0.546|GO:0042398_0.546|GO:0043043_0.546|GO:0043604_0.546|GO:0044272_0.546|GO:0016874_0.535|GO:0004363_0.529|GO:0016879_0.529|GO:0016881_0.529|GO:1904091_0.529
|
IPR005615+33-527_49-527_53-526+|IPR014042+108-387+|IPR014049+55-468+|IPR014709+388-455+|IPR037013+226-351+
|
— |
PF03917+53-526+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+49-527+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-527
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
59609.430
|
5.899
|
-3.500
|
25.237
|
13.093
|
44.592
|
55.408
|
12.713
|
12.524
|
49.715
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1823.963
|
2.601
|
13.850
|
4812.997
|
1694.860
|
199.060
|
223.857
|
75.942
|
1730.382
|
4048.362
|
3054.942
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.184
|
10.717
|
8.548
|
-1.537
|
-3.076
|
— |
-1.510
|
1.706
|
— | — | — | — | — |