Hg_chrom2_TN10mRNA_2348
Organism: Heterodera glycines Gene Locus: chr2:291331-295854 Feature type: polypeptideProtein Sequence
Length: 520
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.537 | 1.342 | 0.804 | 0.531 | 1.122 | 1.036 | 0.755 | 1.442 | 1.197 | 1.585 | 0.758 | 1.923 | 1.816 | 0.999 | 1.138 | 0.687 | 0.883 | 0.816 | 1.331 | 1.075 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2256
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2348
|
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRK
|
11-43
|
0.946
|
— | — | — | — |
0.000
|
— | — |
0.084
|
0.304
|
0.011
|
0.096
|
0.918
|
0.215
|
0.176
|
0.014
|
0.148
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000380
|
4.000
|
4.000
|
Hsc_gene_26008.t1;Hsc_gene_26021.t1;Hsc_gene_26027.t1;Hsc_gene_26027.t2
|
Hsc_gene_26007.t1;Hsc_gene_26008.t1
|
— |
P00182.2 Cytochrome P450 2C3 [Oryctolagus cuniculus]
|
WBS97804.1 cytochrome p450 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.850|GO:0003674_0.770|GO:0009987_0.728|GO:0003824_0.642|GO:0008152_0.625|GO:0044237_0.571|GO:0005575_0.566|GO:0110165_0.566|GO:0016491_0.539|GO:0004497_0.528|GO:0044238_0.505
|
IPR001128+26-495_326-343_453-462_462-473+|IPR002401+57-76_180-198_315-332_335-361_376-394_417-441_452-462_462-485+|IPR017972+455-464+|IPR036396+16-515_19-518+|IPR050182+10-489+
|
— |
PF00067+26-495+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+19-517+CYtochrome_P450_family
|
PTHR24300+10-489+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.655
|
60118.240
|
7.022
|
4.500
|
24.615
|
14.808
|
44.615
|
55.385
|
13.462
|
11.154
|
43.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
153.876
|
9.330
|
246.613
|
91.849
|
29.375
|
33.263
|
66.282
|
421.628
|
187.367
|
195.807
|
192.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.496
|
3.161
|
-1.317
|
-1.674
|
— |
1.002
|
3.560
|
-2.529
|
— | — | — | — | — |
No JSON data available for plots.