Hg_chrom2_TN10mRNA_2349
Organism: Heterodera glycines Gene Locus: chr2:295976-297797 Feature type: polypeptideProtein Sequence
Length: 138
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 0.674 | 0.922 | 1.249 | 2.174 | 0.929 | 0.69 | 1.087 | 1.127 | 1.763 | 1.318 | 1.705 | 1.006 | 0.418 | 0.592 | 0.932 | 0.713 | 0.659 | 0.0 | 0.426 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2257
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
18H08|AF490248.1#tn7jg17491.t1
|
18H08|AF4902481#tn7jg17491t1
|
— | — |
Hg_chrom2_TN10mRNA_2349
|
29-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-20
|
0.998
|
1.000
|
0.000
|
0.000
|
0.709
|
0.283
|
0.009
|
0.568
|
0.072
|
0.097
|
0.092
|
0.015
|
0.062
|
0.113
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006534
|
1.000
|
1.000
|
Hsc_gene_26009.t1
|
— | — | — |
QLK97574.1 secretory protein 18H08 [Heterodera glycines]
|
XP_016181593
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
118-138
|
1.000
|
1-117
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
15336.570
|
4.556
|
-7.500
|
31.884
|
7.246
|
49.275
|
50.725
|
13.768
|
18.116
|
43.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
3028.488
|
0.759
|
23.174
|
22.154
|
1047.418
|
117.665
|
280.099
|
89.393
|
9.251
|
12649.951
|
7232.508
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.694
|
4.722
|
— |
5.533
|
-3.141
|
1.262
|
— |
1.791
|
-10.504
|
— |
-3.458
|
— | — |