Hg_chrom2_TN10mRNA_2358
Organism: Heterodera glycines Gene Locus: chr2:324570-329143 Feature type: polypeptideProtein Sequence
Length: 556
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 1.506 | 0.752 | 0.682 | 0.719 | 0.922 | 0.407 | 1.888 | 1.679 | 1.215 | 1.09 | 1.375 | 1.649 | 0.968 | 1.138 | 0.848 | 0.885 | 0.79 | 1.384 | 1.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2263
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRKL,KRKR,RKRK,PYMKRRV
|
20-60
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.089
|
0.040
|
0.003
|
0.251
|
0.412
|
0.129
|
0.878
|
0.025
|
0.201
|
0.257
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000291
|
6.000
|
3.000
|
Hsc_gene_26011.t1;Hsc_gene_26011.t2;Hsc_gene_26015.t1
|
Hsc_gene_26015.t1
|
— |
Q93834.3 Glycosyltransferase family 92 protein F59C6.8 [Caenorhabditis elegans]
|
XP_024499557.1 Domain of unknown function DUF23 domain-containing protein [Strongyloides ratti];CEF60348.1 Domain of unknown function DUF23 domain-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008166+200-415+|IPR052012+33-536+
|
— |
PF01697+200-415+Glycosyltransferase_family_92
|
— |
PTHR21645+33-536+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-556
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.753
|
64433.600
|
9.855
|
34.500
|
25.000
|
15.647
|
46.403
|
53.597
|
16.547
|
8.453
|
44.784
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
301.124
|
28.223
|
786.996
|
146.904
|
199.284
|
414.507
|
114.043
|
1047.176
|
85.305
|
227.016
|
166.282
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.575
|
2.242
|
-2.314
|
0.409
|
1.072
|
-1.854
|
1.234
|
-3.059
|
— | — | — | — | — |
No JSON data available for plots.