SCN Proteipedia

Hg_chrom2_TN10mRNA_2361

Organism: Heterodera glycines Gene Locus: chr2:334168-355674 Feature type: polypeptide

Protein Sequence

Length: 1,281

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.817	0.817	0.795	0.915	1.431	1.521	0.576	1.522	0.919	1.192	0.769	1.607	1.193	0.856	1.625	1.561	0.857	0.615	0.6	0.459	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2265	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	27-Not_Clustered	0.730

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RYKKRRR,KRLAKYEKEWHEMKRREI,KRICTELGLTVDGQKRKLN	41-61	0.961	—	—	—	—	0.000	—	—	0.249	0.181	0.037	0.712	0.269	0.263	0.290	0.095	0.495	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003170	1.000	2.000	Hsc_gene_26017.t1;Hsc_gene_26017.t2	Hsc_gene_26017.t1;Hsc_gene_26017.t2	—	H2KZZ6.1 Rab GTPase-activating protein tbc-11 [Caenorhabditis elegans]	KAI1709525.1 rab-GTPase-TBC domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.897\|GO:0005575_0.864\|GO:0110165_0.864\|GO:0005622_0.776\|GO:0009987_0.657\|GO:0065007_0.655\|GO:0051179_0.620\|GO:0016020_0.608\|GO:0043226_0.602\|GO:0005737_0.569\|GO:0043229_0.558\|GO:0003674_0.523\|GO:0005488_0.514\|GO:0071944_0.501	IPR000195+679-892_682-869_686-889+\|IPR006020+208-347_279-331+\|IPR011993+203-346+\|IPR022164+405-528+\|IPR035969+671-829_804-927+\|IPR050302+245-1228+	SM00164+679-892+\|SM00462+208-347+	PF00566+686-889+Rab-GTPase-TBC_domain\|PF12473+405-528+Kinesin_protein	G3DSA:1.10.472.80:FF:000007+794-946+Rab_GTPase-activating_protein_1_isoform_X1\|G3DSA:1.10.8.270:FF:000001+702-793+TBC1_domain_family_member_1	PTHR47219+245-1228+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	103-199;556-649;978-1281	3.000	1-102;200-555;650-977	4nc6_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.747	144842.360	7.563	20.500	29.040	9.680	54.645	45.355	16.081	12.959	47.073

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	grey	3050.920	1194.941	2181.495	1567.667	1503.298	2420.536	2007.498	2155.936	4667.365	4960.489	4834.864

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.639	0.254	-0.368	—	0.702	-0.260	-0.273	—	—	-1.399	—	—	—

No JSON data available for plots.

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