Hg_chrom2_TN10mRNA_2365
Organism: Heterodera glycines Gene Locus: chr2:364540-368141 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.261 | 0.85 | 0.516 | 0.997 | 0.815 | 0.712 | 1.776 | 1.412 | 1.591 | 0.765 | 1.869 | 2.025 | 1.042 | 0.916 | 0.721 | 1.042 | 0.736 | 1.294 | 0.88 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2269
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRK
|
11-45
|
0.928
|
— | — | — | — |
0.000
|
— | — |
0.085
|
0.305
|
0.009
|
0.097
|
0.902
|
0.227
|
0.183
|
0.015
|
0.149
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000380
|
4.000
|
4.000
|
Hsc_gene_26008.t1;Hsc_gene_26021.t1;Hsc_gene_26027.t1;Hsc_gene_26027.t2
|
Hsc_gene_26007.t1;Hsc_gene_26021.t1
|
— |
O62671.1 Cytochrome P450 2C41 [Canis lupus familiaris]
|
KAI1715194.1 cytochrome p450 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.825|GO:0003674_0.746|GO:0009987_0.674|GO:0003824_0.618|GO:0008152_0.575|GO:0005575_0.544|GO:0110165_0.544|GO:0044237_0.520|GO:0016491_0.515|GO:0004497_0.502
|
IPR001128+26-517_321-338_392-403_468-477_477-488+|IPR002401+57-76_180-198_310-327_330-356_391-409_432-456_467-477_477-500+|IPR017972+470-479+|IPR036396+16-528_19-531+|IPR050182+10-506+
|
— |
PF00067+26-517+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+19-531+CYtochrome_P450_family
|
PTHR24300+10-506+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-535
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
61385.890
|
6.810
|
3.500
|
23.738
|
15.514
|
43.738
|
56.262
|
13.084
|
10.654
|
44.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
skyblue
|
335.390
|
4.439
|
6.952
|
3.648
|
2.306
|
16.259
|
3760.214
|
6.708
|
5.565
|
37.961
|
24.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
2.826
|
7.866
|
— |
9.267
|
— | — | — | — | — |
No JSON data available for plots.