Hg_chrom2_TN10mRNA_2369
Organism: Heterodera glycines Gene Locus: chr2:390318-394410 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 0.955 | 1.085 | 0.579 | 0.84 | 0.813 | 0.711 | 1.493 | 1.368 | 1.765 | 0.848 | 1.427 | 1.917 | 1.184 | 0.952 | 0.853 | 0.795 | 0.735 | 1.292 | 0.933 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2273
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRRK
|
11-45
|
0.938
|
— | — | — | — |
0.000
|
— | — |
0.080
|
0.323
|
0.009
|
0.102
|
0.908
|
0.209
|
0.181
|
0.023
|
0.138
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000380
|
4.000
|
4.000
|
Hsc_gene_26008.t1;Hsc_gene_26021.t1;Hsc_gene_26027.t1;Hsc_gene_26027.t2
|
Hsc_gene_26007.t1;Hsc_gene_26024.t1
|
— |
O62671.1 Cytochrome P450 2C41 [Canis lupus familiaris]
|
WBS97804.1 cytochrome p450 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.823|GO:0003674_0.723|GO:0009987_0.648|GO:0003824_0.583|GO:0008152_0.547|GO:0005575_0.527|GO:0110165_0.527
|
IPR001128+26-519_321-338_393-404_469-478_478-489+|IPR002401+57-76_180-198_310-327_330-356_392-410_433-457_468-478_478-501+|IPR017972+471-480+|IPR036396+19-532_23-528+|IPR050182+10-507+
|
— |
PF00067+26-519+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000036+19-532+CYtochrome_P450_family
|
PTHR24300+10-507+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-536
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
61159.820
|
6.923
|
4.000
|
24.254
|
14.739
|
42.351
|
57.649
|
13.246
|
11.007
|
45.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
622.762
|
7.437
|
14.545
|
16.134
|
14.499
|
65.614
|
4964.561
|
373.434
|
2.056
|
676.957
|
387.714
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.981
|
— | — |
2.196
|
6.249
|
2.394
|
3.878
|
-8.384
|
— |
-5.185
|
— | — |
No JSON data available for plots.