Hg_chrom2_TN10mRNA_2375
Organism: Heterodera glycines Gene Locus: chr2:424293-426808 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 0.9 | 0.821 | 0.667 | 0.538 | 1.323 | 1.037 | 0.645 | 0.789 | 1.308 | 1.075 | 2.846 | 1.882 | 0.806 | 0.987 | 0.737 | 1.058 | 0.782 | 0.993 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2279
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2375
|
6-pJ2_J3_J4_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
9-30
|
0.966
|
16-75
|
0.870
|
— | — |
0.014
|
— | — |
0.115
|
0.838
|
0.039
|
0.145
|
0.256
|
0.132
|
0.174
|
0.048
|
0.162
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006542
|
1.000
|
1.000
|
Hsc_gene_26045.t1
|
Hsc_gene_26045.t1
|
— |
G5EE96.1 Mitochondrial dicarboxylate carrier [Caenorhabditis elegans]
|
KAH7730507.1 Protein K11G12.5 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0055085
|
GO:0008150_0.917|GO:0009987_0.842|GO:0003674_0.795|GO:0005575_0.733|GO:0110165_0.732|GO:0051179_0.681|GO:0006810_0.678|GO:0051234_0.678|GO:0016020_0.661|GO:0005622_0.640|GO:0055085_0.616|GO:0005737_0.611|GO:0043226_0.591|GO:0043229_0.585|GO:0043227_0.572|GO:0005215_0.562|GO:0022857_0.561|GO:0043231_0.561
|
IPR002067+13-26_26-40_67-87_206-228+|IPR018108+8-92_12-92_97-190_101-188_197-279_197-281+|IPR023395+12-278_12-293+|IPR050391+11-278+
|
— |
PF00153+12-92_97-190_197-279+Mitochondrial_carrier_protein
|
— |
PTHR45618+11-278+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
298-310
|
1.000
|
1-297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
34539.130
|
9.888
|
15.000
|
20.968
|
12.581
|
41.613
|
58.387
|
13.226
|
7.742
|
49.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1306.961
|
312.937
|
586.532
|
537.133
|
789.248
|
907.108
|
470.907
|
791.669
|
278.731
|
3860.580
|
2325.501
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
0.642
|
— |
0.522
|
— |
-0.937
|
— |
-0.609
|
-2.143
|
— | — | — | — |
No JSON data available for plots.