Hg_chrom2_TN10mRNA_2378
Organism: Heterodera glycines Gene Locus: chr2:430405-434935 Feature type: polypeptideProtein Sequence
Length: 512
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.181 | 0.959 | 0.337 | 1.27 | 0.901 | 0.86 | 1.953 | 1.476 | 1.32 | 1.213 | 2.298 | 1.411 | 0.826 | 0.837 | 0.753 | 0.64 | 0.888 | 0.751 | 0.689 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2281
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_26047
|
— |
Hg_chrom2_TN10mRNA_2378
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-21
|
0.968
|
1.000
|
0.000
|
0.000
|
0.452
|
0.212
|
0.104
|
0.715
|
0.200
|
0.110
|
0.138
|
0.027
|
0.153
|
0.239
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006543
|
1.000
|
1.000
|
Hsc_gene_26047.t1
|
Hsc_gene_26047.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
KAI1726783.1 eukaryotic glutathione synthase, ATP binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.942|GO:0003674_0.863|GO:0008152_0.799|GO:0009987_0.743|GO:0005575_0.695|GO:0110165_0.688|GO:0050896_0.682|GO:0044237_0.649|GO:0003824_0.648|GO:0009058_0.638|GO:0044249_0.620|GO:0006790_0.552|GO:0043603_0.550|GO:0006518_0.547|GO:0006575_0.547|GO:0006749_0.547|GO:0006750_0.547|GO:0019184_0.547|GO:0042398_0.547|GO:0043043_0.547|GO:0043604_0.547|GO:0044272_0.547|GO:0016874_0.536|GO:0004363_0.531|GO:0016879_0.531|GO:0016881_0.531|GO:1904091_0.531|GO:0005622_0.530|GO:0042221_0.502
|
IPR004887+247-335+|IPR005615+30-512_38-512_40-511+|IPR014042+91-373+|IPR014049+39-453+|IPR014709+374-441+|IPR016185+245-337+|IPR037013+211-337+
|
— |
PF03199+247-335+Eukaryotic_glutathione_synthase|PF03917+40-511+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+38-512+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-512
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
57941.770
|
7.051
|
6.000
|
28.906
|
12.305
|
46.680
|
53.320
|
16.016
|
12.891
|
44.141
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
2204.563
|
4.179
|
12.810
|
3819.972
|
1422.257
|
152.283
|
169.929
|
45.920
|
1776.790
|
6202.115
|
4305.547
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.391
|
9.703
|
8.325
|
-1.457
|
-3.209
|
— |
-1.849
|
2.034
|
— | — | — | — | — |