Hg_chrom2_TN10mRNA_2383
Organism: Heterodera glycines Gene Locus: chr2:454612-456175 Feature type: polypeptideProtein Sequence
Length: 165
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.423 | 1.128 | 1.102 | 0.627 | 1.616 | 0.622 | 0.505 | 0.606 | 1.347 | 0.901 | 1.745 | 1.426 | 1.852 | 0.816 | 0.371 | 0.866 | 1.093 | 1.01 | 1.399 | 1.604 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2284
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_26051
|
Hg_chrom2_TN10mRNA_2383
|
1-Not_Clustered
|
0.594
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-20
|
0.989
|
1.000
|
0.000
|
0.000
|
0.512
|
0.396
|
0.111
|
0.763
|
0.306
|
0.098
|
0.405
|
0.009
|
0.264
|
0.347
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003174
|
2.000
|
1.000
|
Hsc_gene_26051.t1
|
Hsc_gene_26051.t1
|
— |
P55776.1 Fatty acid-binding protein homolog [Ascaris suum]
|
AVA09713.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0008150_0.823|GO:0009987_0.645|GO:0005575_0.615|GO:0110165_0.611
|
IPR000463+29-51_31-48_90-106_143-163+|IPR007110+1-87+|IPR012674+26-163_26-164+|IPR040094+9-163+
|
— | — | — |
PTHR22725+9-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-165
|
3nr3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
19274.010
|
5.099
|
-3.000
|
30.303
|
15.152
|
50.303
|
49.697
|
14.545
|
15.758
|
44.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
4923.155
|
8862.247
|
2377.097
|
1980.021
|
4866.872
|
10657.871
|
12037.311
|
7287.532
|
196.839
|
3365.318
|
2007.399
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.127
|
-2.299
|
-0.156
|
1.266
|
1.145
|
0.187
|
-0.658
|
0.869
|
-4.192
|
3.454
|
— | — | — |