Hg_chrom2_TN10mRNA_2392
Organism: Heterodera glycines Gene Locus: chr2:486194-488929 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.463 | 1.678 | 0.769 | 0.257 | 1.41 | 1.339 | 0.533 | 1.119 | 2.322 | 1.21 | 1.055 | 2.195 | 1.313 | 0.478 | 1.421 | 0.924 | 0.816 | 0.377 | 1.148 | 1.097 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2292
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom2_TN10mRNA_2392
|
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.379
|
0.255
|
0.004
|
0.505
|
0.190
|
0.157
|
0.130
|
0.026
|
0.325
|
0.186
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006546
|
1.000
|
1.000
|
Hsc_gene_26057.t1
|
Hsc_gene_26057.t1
|
— | — |
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
KAH7420410
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.944|GO:0005575_0.903|GO:0110165_0.901|GO:0009987_0.896|GO:0005622_0.877|GO:0003674_0.854|GO:0065007_0.826|GO:0050789_0.803|GO:0008152_0.800|GO:0050794_0.792|GO:0005488_0.785|GO:0050896_0.781|GO:0071840_0.777|GO:0044237_0.776|GO:0043170_0.775|GO:0009058_0.771|GO:0016043_0.766|GO:0051716_0.764|GO:0044249_0.754|GO:0009059_0.745|GO:0003824_0.737|GO:0010467_0.732|GO:0019222_0.731|GO:0048518_0.730|GO:0048522_0.726|GO:0006996_0.724|GO:0031323_0.722|GO:0048519_0.721|GO:0060255_0.721|GO:0007154_0.717|GO:0023052_0.716|GO:0048523_0.712|GO:0007165_0.709|GO:0009889_0.708|GO:0031326_0.708|GO:0097159_0.708|GO:0010468_0.707|GO:0010556_0.707|GO:0009893_0.706|GO:0044085_0.705|GO:0010646_0.698|GO:0051128_0.698|GO:0010604_0.697|GO:0023051_0.697|GO:0022607_0.696|GO:0031325_0.696|GO:0048583_0.696|GO:0007010_0.694|GO:0009891_0.694|GO:0031328_0.692|GO:0009966_0.691|GO:0016740_0.691|GO:0009892_0.690|GO:0010557_0.689|GO:0035556_0.689|GO:0010605_0.687|GO:0043933_0.687|GO:1902531_0.687|GO:0031324_0.686|GO:0010647_0.684|GO:0023056_0.684|GO:0065003_0.684|GO:0036094_0.683|GO:0043167_0.683|GO:0051130_0.683|GO:0141124_0.683|GO:0009890_0.682|GO:0010628_0.682|GO:0031327_0.682|GO:0033043_0.682|GO:0048584_0.682|GO:0010558_0.681|GO:0140096_0.681|GO:0010629_0.680|GO:0030029_0.680|GO:0044087_0.680|GO:0009967_0.679|GO:0030036_0.678|GO:0097435_0.677|GO:1902533_0.677|GO:0007264_0.675|GO:0010638_0.675|GO:0043254_0.675|GO:0051493_0.675|GO:0044089_0.674|GO:0032956_0.673|GO:0032970_0.673|GO:0031033_0.670|GO:0031034_0.670|GO:0031036_0.670|GO:0031038_0.670|GO:0031334_0.670|GO:0043491_0.670|GO:0043519_0.670|GO:0043520_0.670|GO:0051495_0.670|GO:0051896_0.670|GO:0051897_0.670|GO:1902903_0.670|GO:1902905_0.670|GO:1904901_0.670|GO:1905511_0.670|GO:0043168_0.669|GO:0016772_0.668|GO:1901265_0.667|GO:0000166_0.666|GO:1901363_0.666|GO:0017076_0.663|GO:0032553_0.660|GO:0032555_0.660|GO:0035639_0.660|GO:0097367_0.660|GO:0016301_0.659|GO:0030554_0.659|GO:0005524_0.658|GO:0016773_0.658|GO:0032559_0.658|GO:0004672_0.657|GO:0031252_0.540
|
IPR000719+17-317_65-311+|IPR011009+65-315+
|
— |
PF00069+65-311+Protein_kinase_domain
|
— |
PTHR44167+67-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
47438.430
|
9.047
|
9.500
|
28.856
|
12.189
|
52.736
|
47.264
|
16.169
|
12.687
|
37.065
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
426.843
|
5.508
|
29.421
|
71.137
|
27.226
|
9.651
|
13.162
|
8.537
|
321.806
|
1564.344
|
1031.828
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.189
|
3.554
|
1.382
|
-1.417
|
-1.482
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.