Hg_chrom2_TN10mRNA_2393
Organism: Heterodera glycines Gene Locus: chr2:490806-495106 Feature type: polypeptideProtein Sequence
Length: 530
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 1.667 | 0.892 | 0.195 | 0.975 | 0.919 | 0.674 | 1.415 | 1.468 | 1.275 | 0.972 | 1.665 | 1.258 | 0.798 | 0.886 | 0.728 | 0.835 | 1.458 | 0.435 | 0.943 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2293
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_26058
|
— |
Hg_chrom2_TN10mRNA_2393
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — |
0.680
|
0.383
|
0.000
|
— |
0.551
|
0.281
|
0.159
|
0.670
|
0.148
|
0.178
|
0.132
|
0.051
|
0.130
|
0.256
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006547
|
1.000
|
1.000
|
Hsc_gene_26058.t1
|
Hsc_gene_26058.t1
|
— |
P35668.1 Glutathione synthetase [Xenopus laevis]
|
5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004363|GO:0005524|GO:0006750|GO:0016874
|
GO:0008150_0.939|GO:0003674_0.874|GO:0008152_0.803|GO:0009987_0.752|GO:0005575_0.694|GO:0050896_0.683|GO:0110165_0.674|GO:0003824_0.666|GO:0044237_0.650|GO:0009058_0.636|GO:0044249_0.614|GO:0006790_0.554|GO:0043603_0.552|GO:0006518_0.548|GO:0006575_0.548|GO:0006749_0.548|GO:0006750_0.548|GO:0019184_0.548|GO:0042398_0.548|GO:0043043_0.548|GO:0043604_0.548|GO:0044272_0.548|GO:0016874_0.537|GO:0004363_0.531|GO:0016879_0.531|GO:0016881_0.531|GO:1904091_0.531|GO:0005622_0.523|GO:0042221_0.505
|
IPR005615+30-530_39-529_48-529+|IPR014042+116-391+|IPR014049+49-471+|IPR014709+392-459+|IPR037013+230-355+
|
— |
PF03917+48-529+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— |
PTHR11130+39-529+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-530
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
59379.390
|
7.640
|
7.500
|
24.340
|
11.132
|
45.283
|
54.717
|
13.585
|
10.755
|
49.811
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3198.310
|
9.471
|
32.503
|
4806.924
|
2016.081
|
123.770
|
126.435
|
51.370
|
1393.177
|
10260.266
|
6460.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.548
|
8.848
|
7.318
|
-1.285
|
-4.012
|
— |
-1.388
|
1.446
|
— | — |
-2.181
|
— | — |