Hg_chrom2_TN10mRNA_2396
Organism: Heterodera glycines Gene Locus: chr2:509925-512343 Feature type: polypeptideProtein Sequence
Length: 439
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.536 | 1.532 | 1.257 | 0.38 | 1.752 | 0.759 | 0.797 | 1.468 | 0.954 | 0.725 | 1.474 | 1.392 | 1.051 | 1.069 | 1.041 | 0.672 | 0.69 | 0.526 | 1.206 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2295
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.304
|
— | — |
0.050
|
0.061
|
0.028
|
0.168
|
0.055
|
0.232
|
0.312
|
0.009
|
0.244
|
0.940
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003175
|
2.000
|
1.000
|
Hsc_gene_26061.t1
|
Hsc_gene_26061.t1
|
— |
Q20191.5 Zinc metalloproteinase nas-13 [Caenorhabditis elegans]
|
KAI1702753.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.763|GO:0005575_0.653|GO:0110165_0.644|GO:0003674_0.603|GO:0032501_0.515
|
IPR001506+118-311_126-311_148-166_201-219_220-237_259-274_296-309+|IPR003582+351-388_351-389_352-388_402-439_403-439+|IPR006026+123-264+|IPR024079+60-313+|IPR034035+129-308+
|
SM00235+123-264+|SM00254+351-389_402-439+
|
PF01400+126-311+Astacin_(Peptidase_family_M12A)|PF01549+351-388_402-439+ShK_domain-like
|
G3DSA:3.40.390.10:FF:000015+66-313+Meprin_A_subunit
|
PTHR10127+78-404+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-439
|
8a28_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
49230.600
|
6.577
|
0.500
|
22.323
|
11.390
|
47.153
|
52.847
|
11.617
|
10.706
|
53.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
59.515
|
24.589
|
115.009
|
114.963
|
57.243
|
35.777
|
32.245
|
110.770
|
0.000
|
76.404
|
43.660
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.996
|
2.087
|
— |
-1.035
|
-0.665
|
— |
1.535
|
-1.643
|
-7.035
|
7.702
|
— | — | — |
No JSON data available for plots.