Hg_chrom2_TN10mRNA_2401
Organism: Heterodera glycines Gene Locus: chr2:522249-524495 Feature type: polypeptideProtein Sequence
Length: 350
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 1.528 | 1.195 | 0.197 | 0.238 | 0.513 | 1.02 | 0.571 | 1.143 | 1.274 | 1.126 | 1.849 | 1.667 | 0.769 | 0.466 | 1.347 | 1.171 | 0.649 | 1.538 | 1.429 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2300
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom2_TN10mRNA_2401
|
17-Not_Clustered
|
0.492
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|extracellular
|
chloroplast
|
— |
40-63
|
0.758
|
71-91
|
0.990
|
1-23
|
0.924
|
1.000
|
0.000
|
0.000
|
0.322
|
0.321
|
0.110
|
0.659
|
0.261
|
0.132
|
0.147
|
0.034
|
0.259
|
0.648
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006553
|
1.000
|
1.000
|
Hsc_gene_26066.t1
|
Hsc_gene_26066.t1
|
— |
Q9WTV1.3 Chitinase-3-like protein 1 [Rattus norvegicus]
|
AAN14978.1 chitinase [Heterodera glycines];QLK97562.1 chitinase [Heterodera glycines]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0008061
|
GO:0008150_0.858|GO:0005575_0.766|GO:0110165_0.762|GO:0003674_0.746|GO:0003824_0.513
|
IPR001223+24-350_25-338+|IPR011583+24-338+|IPR017853+25-347+|IPR029070+247-311+
|
SM00636+24-338+
|
PF00704+25-338+Glycosyl_hydrolases_family_18
|
— |
PTHR46073+22-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-350
|
8hw6_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.923
|
38500.840
|
9.323
|
8.000
|
18.857
|
14.000
|
44.000
|
56.000
|
10.857
|
8.000
|
55.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
3583.977
|
12.591
|
1460.336
|
2640.449
|
478.748
|
29.174
|
37.745
|
1283.931
|
15948.807
|
1489.677
|
7686.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.633
|
7.571
|
0.958
|
-2.496
|
-4.020
|
— |
5.360
|
-4.948
|
3.315
|
-2.450
|
— | — | — |