Hg_chrom2_TN10mRNA_2408
Organism: Heterodera glycines Gene Locus: chr2:544550-547734 Feature type: polypeptideProtein Sequence
Length: 489
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.571 | 1.569 | 0.967 | 0.494 | 1.125 | 1.993 | 0.536 | 0.92 | 1.636 | 1.105 | 0.589 | 1.804 | 1.193 | 0.983 | 1.252 | 1.344 | 0.872 | 0.62 | 1.416 | 0.601 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2306
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.661
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.553
|
0.172
|
0.002
|
0.735
|
0.118
|
0.148
|
0.084
|
0.083
|
0.050
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001107
|
3.000
|
2.000
|
Hsc_gene_26073.t1;Hsc_gene_26073.t2
|
— | — |
Q94JZ8.1 Plant UBX domain-containing protein 7 [Arabidopsis thaliana]
|
KAH7712754.1 UBX domain-containing protein [Aphelenchus avenae]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.759|GO:0110165_0.751|GO:0005622_0.704|GO:0016020_0.679|GO:0008150_0.672|GO:0003674_0.655|GO:0043226_0.648|GO:0043229_0.625|GO:0005737_0.615|GO:0005488_0.614|GO:0043227_0.608|GO:0043231_0.590|GO:0005515_0.581
|
IPR001012+403-484_406-475+|IPR006577+204-326+|IPR029071+401-487+|IPR036249+200-333+|IPR050730+14-484+
|
SM00594+204-326+
|
PF00789+406-475+UBX_domain|PF13899+220-301+Thioredoxin-like|PF14555+16-45+UBA-like_domain
|
— |
PTHR23322+14-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
57-159
|
2.000
|
1-56;160-489
|
2dlx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.684
|
55955.020
|
5.513
|
-5.500
|
23.926
|
10.020
|
53.170
|
46.830
|
11.861
|
12.065
|
46.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
317.421
|
1431.547
|
429.349
|
162.525
|
70.088
|
76.478
|
34.461
|
892.899
|
61.951
|
180.751
|
129.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.967
|
-3.276
|
-1.292
|
-1.244
|
— |
-1.142
|
3.447
|
-4.557
|
— | — | — | — | — |
No JSON data available for plots.