Hg_chrom2_TN10mRNA_2409
Organism: Heterodera glycines Gene Locus: chr2:548322-551550 Feature type: polypeptideProtein Sequence
Length: 266
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 1.399 | 1.025 | 0.389 | 1.19 | 1.832 | 0.627 | 1.316 | 1.921 | 1.168 | 0.911 | 1.327 | 1.566 | 0.434 | 1.381 | 0.591 | 0.924 | 0.854 | 0.578 | 0.885 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2307
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.333
|
0.138
|
0.008
|
0.764
|
0.114
|
0.033
|
0.140
|
0.004
|
0.168
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002896
|
2.000
|
1.000
|
Hsc_gene_17852.t1
|
— | — |
Q18434.1 Guanine nucleotide-binding protein alpha-17 subunit [Caenorhabditis elegans]
|
KAH7726204.1 small G-protein GPA3 [Aphelenchus avenae]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0007165|GO:0007186|GO:0019001|GO:0031683
|
GO:0005575_0.872|GO:0110165_0.867|GO:0008150_0.828|GO:0016020_0.775|GO:0009987_0.663|GO:0071944_0.653|GO:0005886_0.647|GO:0050896_0.644|GO:0005622_0.639|GO:0003674_0.632|GO:0043226_0.584|GO:0065007_0.582|GO:0050789_0.534|GO:0005737_0.529|GO:0050794_0.523|GO:0051716_0.507|GO:0043227_0.505
|
IPR001019+2-265_7-225_9-225_9-266_11-264_12-27_145-167_174-191_196-224+|IPR011025+38-159_39-158+|IPR027417+7-263_12-225_227-266+
|
SM00275+2-265+
|
PF00503+7-225+G-protein_alpha_subunit
|
G3DSA:3.40.50.300:FF:000720+148-229+Guanine_nucleotide-binding_protein_G(k)_subunit_alpha
|
PTHR10218+9-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-266
|
6nbi_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
30876.250
|
7.441
|
3.500
|
28.195
|
12.030
|
51.128
|
48.872
|
15.414
|
12.782
|
41.353
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
25.732
|
24.870
|
50.228
|
15.823
|
8.597
|
7.990
|
5.170
|
60.749
|
37.317
|
19.555
|
27.167
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
-0.791
|
-1.554
|
-0.918
|
— | — |
2.824
|
-3.414
|
— | — | — | — | — |
No JSON data available for plots.