Hg_chrom2_TN10mRNA_2410
Organism: Heterodera glycines Gene Locus: chr2:551756-554209 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 1.397 | 0.874 | 0.932 | 1.001 | 1.001 | 0.572 | 2.402 | 1.268 | 1.502 | 0.865 | 1.413 | 1.084 | 0.404 | 1.103 | 1.158 | 0.985 | 0.956 | 0.924 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2308
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.428
|
0.464
|
0.068
|
0.626
|
0.141
|
0.156
|
0.159
|
0.027
|
0.108
|
0.170
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003176
|
2.000
|
1.000
|
Hsc_gene_26074.t1
|
Hsc_gene_26074.t1
|
— |
Q8VBZ0.2 Dehydrogenase/reductase SDR family member on chromosome X homolog [Mus musculus]
|
KAI1696665.1 short chain dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.860|GO:0005575_0.831|GO:0110165_0.831|GO:0009987_0.667|GO:0065007_0.643|GO:0005622_0.603|GO:0016020_0.603|GO:0003674_0.582|GO:0005737_0.545|GO:0043226_0.520|GO:0043229_0.514|GO:0008152_0.503
|
IPR002347+9-161+|IPR036291+8-285+
|
— |
PF00106+9-161+short_chain_dehydrogenase
|
— |
PTHR43157+9-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.675
|
37720.110
|
7.713
|
9.000
|
26.727
|
12.312
|
50.751
|
49.249
|
15.916
|
10.811
|
47.447
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
354.077
|
790.120
|
468.868
|
157.422
|
79.263
|
98.683
|
25.760
|
984.331
|
34.518
|
546.528
|
327.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.982
|
-2.464
|
-1.466
|
-1.020
|
— |
-1.930
|
3.225
|
-5.119
|
-4.093
|
— | — | — | — |
No JSON data available for plots.