SCN Proteipedia

Hg_chrom2_TN10mRNA_2413

Organism: Heterodera glycines Gene Locus: chr2:563271-569125 Feature type: polypeptide

Protein Sequence

Length: 644

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.372	2.094	0.621	0.321	0.466	1.911	0.462	1.087	1.208	1.574	0.776	1.005	1.294	0.985	0.38	1.331	1.044	0.706	0.239	0.685	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_2310	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Not_Clustered	0.900

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	KRIR	—	—	3-37	0.996	—	—	0.000	—	—	0.672	0.079	0.007	0.503	0.146	0.034	0.104	0.040	0.048	0.119

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006558	1.000	1.000	Hsc_gene_26076.t1	Hsc_gene_26076.t1	—	P17225.3 Polypyrimidine tract-binding protein 1 [Mus musculus]	KAH7720861.1 polypyrimidine tract-binding protein 1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0005634\|GO:0006397	GO:0008150_0.927\|GO:0009987_0.875\|GO:0065007_0.803\|GO:0050789_0.786\|GO:0050794_0.779\|GO:0005575_0.745\|GO:0110165_0.740\|GO:0008152_0.691\|GO:0044237_0.673\|GO:0044238_0.671\|GO:0009058_0.667\|GO:0016020_0.661\|GO:0043170_0.656\|GO:0044249_0.645\|GO:0009059_0.642\|GO:0019222_0.634\|GO:0031323_0.634\|GO:0006139_0.631\|GO:0080090_0.626\|GO:0010467_0.625\|GO:0060255_0.624\|GO:0034654_0.621\|GO:0009889_0.616\|GO:0010556_0.616\|GO:0031326_0.616\|GO:0010468_0.612\|GO:0003674_0.611\|GO:0016070_0.610\|GO:0090304_0.610\|GO:0141187_0.609\|GO:0032774_0.604\|GO:0006396_0.575\|GO:0005488_0.540\|GO:0005622_0.516\|GO:0048519_0.513\|GO:0048523_0.504	IPR000504+263-336_450-524_451-520_567-640_568-636+\|IPR006536+193-640+\|IPR012677+259-363_439-544_556-641+\|IPR021790+256-336+\|IPR035979+257-359_452-629+	SM00360+263-336_451-520_568-636+	PF11835+256-336+RRM-like_domain\|PF13893+436-546+RNA_recognition_motif._(a.k.a._RRM,_RBD,_or_RNP_domain)	G3DSA:3.30.70.330:FF:000341+445-544+Hephaestus,_isoform_C	PTHR15592+220-639+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-63	1.000	64-644	2evz_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.870	69788.270	8.632	12.000	15.373	9.472	47.516	52.484	9.161	6.211	54.503

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	1404.678	390.379	1224.282	618.346	206.944	761.316	361.684	1743.620	4720.573	615.074	2374.573

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.422	0.526	-0.878	-1.610	1.893	-1.066	1.098	-2.133	2.828	-2.759	—	—	—

No JSON data available for plots.

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