Hg_chrom2_TN10mRNA_2414
Organism: Heterodera glycines Gene Locus: chr2:570139-574091 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.16 | 1.137 | 0.518 | 0.351 | 0.713 | 0.679 | 0.897 | 1.222 | 1.629 | 1.734 | 0.494 | 1.318 | 2.489 | 0.587 | 0.623 | 0.873 | 1.002 | 1.111 | 0.47 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2311
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.074
|
0.091
|
0.012
|
0.159
|
0.470
|
0.686
|
0.461
|
0.005
|
0.480
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006559
|
1.000
|
1.000
|
Hsc_gene_26077.t1
|
Hsc_gene_26077.t1
|
— |
Q95M75.1 Ammonium transporter Rh type B [Sus scrofa]
|
KAF7632997.1 Ammonium_transp domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0008519|GO:0016020|GO:0072488
|
GO:0008150_0.841|GO:0005575_0.787|GO:0110165_0.784|GO:0009987_0.767|GO:0016020_0.728|GO:0006810_0.724|GO:0051179_0.724|GO:0051234_0.724|GO:0071944_0.715|GO:0055085_0.712|GO:0005886_0.706|GO:0003674_0.643|GO:0098660_0.626|GO:0071705_0.618|GO:0098662_0.609|GO:0072488_0.556|GO:0005215_0.551|GO:0022857_0.551
|
IPR002229+82-99_151-167_174-197_208-223_242-260_272-294_307-320_330-348_369-385+|IPR024041+81-451+|IPR029020+28-460+
|
— |
PF00909+81-451+Ammonium_Transporter_Family
|
— |
PTHR11730+44-452+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
488-491
|
1.000
|
1-487
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.620
|
54018.960
|
6.770
|
2.000
|
15.886
|
15.479
|
35.642
|
64.358
|
8.758
|
7.128
|
48.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5142.024
|
35965.525
|
7103.339
|
1062.530
|
914.882
|
1055.166
|
2142.365
|
4329.849
|
1100.836
|
1955.608
|
1589.277
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.569
|
-5.218
|
-2.633
|
-0.247
|
0.220
|
1.029
|
1.942
|
-0.879
|
— | — | — | — | — |
No JSON data available for plots.