Hg_chrom2_TN10mRNA_2415
Organism: Heterodera glycines Gene Locus: chr2:579250-581421 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 1.209 | 1.236 | 0.414 | 0.6 | 1.333 | 0.381 | 2.4 | 1.067 | 1.297 | 1.152 | 1.647 | 1.667 | 1.0 | 1.061 | 0.514 | 1.18 | 0.788 | 0.923 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_2312
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.816
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
1-35
|
0.964
|
— | — |
0.000
|
— | — |
0.283
|
0.168
|
0.033
|
0.602
|
0.228
|
0.453
|
0.391
|
0.023
|
0.183
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006560
|
1.000
|
1.000
|
Hsc_gene_26079.t1
|
Hsc_gene_26079.t1
|
— |
Q86TA1.2 MOB kinase activator 3B [Homo sapiens]
|
KAI1709208.1 mob1/phocein family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.863|GO:0110165_0.862|GO:0005622_0.822|GO:0008150_0.802|GO:0009987_0.735|GO:0065007_0.690|GO:0005737_0.677|GO:0050789_0.668|GO:0050794_0.665|GO:0016020_0.603|GO:0043226_0.531|GO:0003674_0.528|GO:0043227_0.503
|
IPR005301+17-220_40-214_42-213+|IPR036703+11-226_24-222+
|
SM01388+40-214+
|
PF03637+42-213+Mob1/phocein_family
|
G3DSA:1.20.140.30:FF:000001+10-224+MOB_kinase_activator_1A
|
PTHR22599+17-220+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
230-250
|
1.000
|
1-229
|
5twf_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
29058.350
|
9.393
|
12.000
|
28.000
|
16.000
|
49.200
|
50.800
|
17.600
|
10.400
|
45.200
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
286.975
|
340.619
|
668.994
|
227.335
|
120.687
|
145.415
|
174.826
|
609.532
|
186.957
|
257.518
|
227.278
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.744
|
-0.721
|
-1.449
|
-0.947
|
— | — |
1.969
|
-1.665
|
— | — | — | — | — |
No JSON data available for plots.